Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2785 ATGAAATGCCAAAGGGTTCAGGTGGATGGATCATTTGTTCCTGCGATTCACGATGAAGTAATGGAAGTTGAGCATTTACTTGCAGAACCTAGAAACGATCATGTTTCAGTGGATAGTGTCTTGTATTTTCATGAGGAGAATCTAGGGAAATGCTATGACGTTGAAAATGTTTCCTGCGGGTTTGAATTTGGTCTAAGAACAAGCATTGTTGGATCAGATTCTCATACAACTCTGAATGGAAAAGATGATTTGAAACTTGAGGTACTTGATGGATTGCTGGATGTTGAAATTGATGATCTTCATGGAACAGATGGTTTTTCCAGCGCATGTGAAGATTATCTTTTGGACTTTGAATTTTCTGACAAAGCTGTGGGACAAGGTTCTGGTCCTTCCAGAGAATTCCTTTTGCAAAATTCAAGTTCTGATAGTCGTTCTCCAGGTGTAAGCGGAAGTAGCAGTGGTGTTGGTGGGGTTTTAGAATCATCAAAGGTGGCCATTGCTCAATCTGAATATGAAAATGTTTCTCTAGATAATAGAGTAACCTATGAGTTATATGGTGCCATTGGGAACAATCCCTGTCAAACATCAAATGGAGATTGCATTTGCAATTCACTTGATATACAGCATTTAAATGAGTTGGATAATGATGACCCATTTGCAGATGGTATATTGTCTCATGAGAAGGAAAAGGGTTCTGTAGAAGAATGCCAAACTGCTGCACATAGAGAAAAGAGATTCCGCAAGCCTACTCAGAGGTATATTGAAGAATTTTCAAATTTAAGGTCAAAAGAAAAGGTTTCGACTGCTGCAACAAAAAAGAAACACCTGAATGTGATTTCTCATCATGAACTTCATCATATAAGGCTTAGAGCATTGAGAAAGATTCCAAGCAAGAATTCTGATAGTGGAATTAGTGATGTGGCACTTTCTGAGTTTCAGGTTGGTAAGGGACGTCTGAAGAAAGAGGAAATTGAGTATGATAAAGAGCCTTTTGCCTCTGATTCTGAGGATGAGTGTGTGACACCAAAAAGATCTAGAAAAAATGATCGGAGGAAGCATCAGAGAATGTGGACTTTATCTGAAGTGATCAAGTTGGTTGATGGCATTTCTGAATATGGAGTTGGTCGATGGACTGATATAAAGAGGCTTCTGTTTTCTTCTTCTAGTTACCGCACACCCATAGATCTCAGGGACAAGTGGCGTAATCTATTAAGAGCCTGTTCTGCACAGAATCTTAACAAGAAAGAGACTGAACAAAAGCAGGAGCATGCTTTGCGTCCCTTACCAATTACTGTACTACGTCGTGTCCGTGAATTGGCTAAAATTTACCCATACCCGAGGGAACGTTGCTTAAAGGATCCAAATATTGGCCAAGTCCCCTCTTCGGCCCTTCCAACTCAGAGTAAAGGTAGTCTTAGCAAAAGAAACGTACCTAGGAAGAAGTGTACTTGA 1452 0.3988 MKCQRVQVDGSFVPAIHDEVMEVEHLLAEPRNDHVSVDSVLYFHEENLGKCYDVENVSCGFEFGLRTSIVGSDSHTTLNGKDDLKLEVLDGLLDVEIDDLHGTDGFSSACEDYLLDFEFSDKAVGQGSGPSREFLLQNSSSDSRSPGVSGSSSGVGGVLESSKVAIAQSEYENVSLDNRVTYELYGAIGNNPCQTSNGDCICNSLDIQHLNELDNDDPFADGILSHEKEKGSVEECQTAAHREKRFRKPTQRYIEEFSNLRSKEKVSTAATKKKHLNVISHHELHHIRLRALRKIPSKNSDSGISDVALSEFQVGKGRLKKEEIEYDKEPFASDSEDECVTPKRSRKNDRRKHQRMWTLSEVIKLVDGISEYGVGRWTDIKRLLFSSSSYRTPIDLRDKWRNLLRACSAQNLNKKETEQKQEHALRPLPITVLRRVRELAKIYPYPRERCLKDPNIGQVPSSALPTQSKGSLSKRNVPRKKCT 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2785 483 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 349 408 IPR017930 -
Glsi02g2785 483 SMART sant 353 406 IPR001005 -
Glsi02g2785 483 Gene3D - 343 453 - -
Glsi02g2785 483 MobiDBLite consensus disorder prediction 130 156 - -
Glsi02g2785 483 MobiDBLite consensus disorder prediction 459 473 - -
Glsi02g2785 483 CDD SANT_TRF 355 405 - -
Glsi02g2785 483 MobiDBLite consensus disorder prediction 453 483 - -
Glsi02g2785 483 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 1 467 - -
Glsi02g2785 483 Pfam Myb-like DNA-binding domain 357 404 IPR001005 -
Glsi02g2785 483 SUPERFAMILY Homeodomain-like 351 406 IPR009057 -
Glsi02g2785 483 MobiDBLite consensus disorder prediction 131 156 - -
Glsi02g2785 483 ProSiteProfiles Myb-like domain profile. 349 404 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2785 Glsi-ChrGlsi02 77172567 77176525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2785 355 404 Single Myb Histone (SMH) Gene Family AT1G15720 46.000 9.71e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Glsi02g2785 Myb_DNA-binding 8e-08 CL0123