Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2749 ATGTTTAAGAAAATCATGAAGGGTGGGCACAAGAAGCCCTCCAAGTCTGACCCTAACGATTCATCGCCCTATGGCTACGGCCCCCCCGGGAACCGCAATTCGGCCTCGGCCTCCGCCAATGTCGTCGTCAACCATGCCTCTCGGACTTGTCCGCCCACATCCGGCCCTAATTTTGGTGGGGTTGCTGGGATGGCGGCTGGTCCTCCTTCGGGTACTATCGAACCCCTCCCCATGTTCCGGGATGTGCCCGTTTCGGAGAGGCAGAACTTGTTTCTTCGGAAGTTACAGGTTTGTTGTTACGTTTTTGACTTTACGGACACCTTGAAGTCCGCTCGAGAAAAGGAAATCAAGCGGCAGTCACTTATGGATTTGGTTGACTTTATACAATCCGGGTCAGGAAAAATTACAGAGACTTGTCAGGAGGAAATGATAAGAATGATATCAGTTAATATATTTCGATGCTTGCCTCCGGCATCCCATGAAAATACAGGGCAAGAAGCTACCGATCCAGAAGAGGATGAACCTTGTTTGGATCCATCGTGGCCCCATTTGCAGCTCGTGTATGAGTTGCTTCTGAGATATGTCGTGTCATCCGATACGGATACCAAGGTTGCCAAGCGGTACATTGATCATTCCTTTGTGTTGAAATTACTTGATTTATTTGACTCTGAGGACCCCCGCGAGCGAGAATACTTGAAAACCATCCTGCATCGCATATACGGTAAATTCATGGTTCACCGGCCGTTTATTAGGAAGGCAATTAATAACATTTTTTATCGTTTTATATATGAAACCGAGAGGCATAGTGGTATTGGCGAGCTTCTGGAGATTCTTGGGAGTATAATTAATGGGTTTGCACTGCCGATGAAAGAGGAACACAAGTTATTTCTGGTTCGGGCACTGATACCTTTACATAAACCTAAGCCGATTGCCATGTATCATCAGCAGTTGTCGTACTGCATCACTCAGTTTGTTGAAAAGGATTACAAGCTGGCAGATACAGTCATTAGGGGTTTGTTGAAGTACTGGCCTGTGACCAATTGCCAGAAAGAAGTTCTCTTCCTCGGAGAACTGGAGGAAGTTCTGGAGGCGACACAAGCTGCAGAATTCCAGCGTTGCATGGTTCCCCTGTTTAGACAGATTGCCCGATGCCTCAATAGCTCTCACTTTCAGGTTGCAGAACGAGCCCTCTTTTTGTGGAATAACGAGCACGTTGTGAGCTTAATTGCCCAAAGTCGGACTGTGATATTGCCAATAATATTTGAAGCGTTGGAGAAAAATATCCAGAGTCACTGGAACCAGGCAGTTCATGGGCTGACTGTTAATGTCCGGAAAATGTTTTTGGAAATGGATGCTGAATTATTTGAAGAGTGCCAGAGGCAGTATGCAGAGAGAGAGGCTAAAGCCAAAGAGGTGGAAGAGCAGCGGGAATTGAATTGGAAGAGACTGGCAGATGCGGCTGCACAGACAGTGAGCGAGGATATGATCACGGCTGGACGCAGCTTGTTACCCCGTTGCATCTTCAAGGTGAATATAACCCTGAATCATCATCATCATCCTTTCAAAAAGCAACGACTAGAGGCCGCATACAAAGGGATAAAAGCAAAGATAAGGAAAATGTCGAAGAAAGGAGGAGCTGCTTTGCTTCAAAAGGATGCGCCATGGAGAGCGTCATCTCAGAAACCCTTACCCAAAATTCATCAATCTCCAATTCTTCGCCTTTCCAGAACCCCTTATTCCGATTATGCCCTGTCCGTTATGAGGCACCCTAACCCTATTGGAAGTGGGTTGGCTGAGGAAGCCATCGTGGAAGCAGCGGGTCCTGATTGCATCGTACCAGGGCAAATGACGCCGCTCAAACTACTTGGCGTCAAGGTCTGGCCCATCACGGTGGACCTGAAATTCTTGGAACCAGTTGGACGAGAACTGAAGTTGCTCGGGAAGTTCATGGATGATGCTGTCAATCTGATGAACAAATCATTTATAGATCTATCGAAGTCTGCAAACCAAGATGGTTTTGCTGGATATCGAACCTGGCGTGTTGTGAAAGTTATCTGGGAGAGGCTGGGCGAATCTGAGCCCACTTATTGCGCATGTGTGGAGTTGCTGCCTCAGCACCTCAGCAAATGTATCCGAAGAAAAGCTAGGAAGATCTTGATGGAAGATACAGAATCAACCATGCAAGGAGAAAATTTGCGTAAAGGGCCTTGGCTTCAAGAGGAAGATGAGCAACTCACCACCTTTGTTACTTGTCTGGGGGGACGACGGTGGGACTCCCTTGCCAAAGTAGCTGGCCTCAGGAGAAGTGGCAAAAGTTGCAGGTTGAGGTGGATGAACTATCTTCGTCCAAATCTGAAGCATGGACCTTTTACCGTTGAGGAAGAGCACCTCATTCTTCAACTTCAGCAGCAATGGGGCAACAAGTGGTCGAAGATTGCACGCAGTCTGCCAGGAAGAACAGATAATGAAATCAAGAATTACTGGCGAACCCATTTAAGAAAAAAAGCACGAGTTGAACAAGATGAGTTCCAATATAAACTAGACAACACTGGACATGACGTCTTCAATAAGACAAACATTGATATGGTTTCCAAGGACTACAACCAAGTGAACCTAGAATTTCAAGAAAATGACGCGGGGACTGAGGATAGATCCATTCACCCTATTCCATTATCAGACTGGGAATTGACAAGTTCACCATATGAAATTCGGATATCAGATTGGATAGCAGCATTGCAAAAGGATCACAGTCAGATAGAATATGAACATGATTGTCAAAGCACCGGCACATGGTTTGGGAATGACTATGATACGTGGGGTTATTCAGATTCCCTCTGGGACCTGAATTAA 2850 0.4632 MFKKIMKGGHKKPSKSDPNDSSPYGYGPPGNRNSASASANVVVNHASRTCPPTSGPNFGGVAGMAAGPPSGTIEPLPMFRDVPVSERQNLFLRKLQVCCYVFDFTDTLKSAREKEIKRQSLMDLVDFIQSGSGKITETCQEEMIRMISVNIFRCLPPASHENTGQEATDPEEDEPCLDPSWPHLQLVYELLLRYVVSSDTDTKVAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLVRALIPLHKPKPIAMYHQQLSYCITQFVEKDYKLADTVIRGLLKYWPVTNCQKEVLFLGELEEVLEATQAAEFQRCMVPLFRQIARCLNSSHFQVAERALFLWNNEHVVSLIAQSRTVILPIIFEALEKNIQSHWNQAVHGLTVNVRKMFLEMDAELFEECQRQYAEREAKAKEVEEQRELNWKRLADAAAQTVSEDMITAGRSLLPRCIFKVNITLNHHHHPFKKQRLEAAYKGIKAKIRKMSKKGGAALLQKDAPWRASSQKPLPKIHQSPILRLSRTPYSDYALSVMRHPNPIGSGLAEEAIVEAAGPDCIVPGQMTPLKLLGVKVWPITVDLKFLEPVGRELKLLGKFMDDAVNLMNKSFIDLSKSANQDGFAGYRTWRVVKVIWERLGESEPTYCACVELLPQHLSKCIRRKARKILMEDTESTMQGENLRKGPWLQEEDEQLTTFVTCLGGRRWDSLAKVAGLRRSGKSCRLRWMNYLRPNLKHGPFTVEEEHLILQLQQQWGNKWSKIARSLPGRTDNEIKNYWRTHLRKKARVEQDEFQYKLDNTGHDVFNKTNIDMVSKDYNQVNLEFQENDAGTEDRSIHPIPLSDWELTSSPYEIRISDWIAALQKDHSQIEYEHDCQSTGTWFGNDYDTWGYSDSLWDLN 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2749 949 MobiDBLite consensus disorder prediction 1 37 - -
Glsi02g2749 949 Coils Coil 455 475 - -
Glsi02g2749 949 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 493 IPR002554 GO:0000159|GO:0007165|GO:0019888
Glsi02g2749 949 Coils Coil 523 543 - -
Glsi02g2749 949 CDD SANT 789 832 IPR001005 -
Glsi02g2749 949 SUPERFAMILY ARM repeat 88 469 IPR016024 -
Glsi02g2749 949 FunFam Serine/threonine protein phosphatase 2A regulatory subunit 83 486 - -
Glsi02g2749 949 Gene3D - 789 854 - -
Glsi02g2749 949 CDD SANT 736 781 IPR001005 -
Glsi02g2749 949 Gene3D - 734 786 - -
Glsi02g2749 949 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 729 781 IPR017930 -
Glsi02g2749 949 Gene3D - 83 486 IPR011989 -
Glsi02g2749 949 MobiDBLite consensus disorder prediction 18 37 - -
Glsi02g2749 949 ProSiteProfiles Myb-like domain profile. 782 832 IPR001005 -
Glsi02g2749 949 FunFam Myb transcription factor 734 786 - -
Glsi02g2749 949 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 76 487 IPR002554 GO:0000159|GO:0007165|GO:0019888
Glsi02g2749 949 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 782 836 IPR017930 -
Glsi02g2749 949 ProSiteProfiles Myb-like domain profile. 729 781 IPR001005 -
Glsi02g2749 949 Pfam Myb-like DNA-binding domain 734 781 IPR001005 -
Glsi02g2749 949 Pfam Myb-like DNA-binding domain 788 832 IPR001005 -
Glsi02g2749 949 SMART sant 733 783 IPR001005 -
Glsi02g2749 949 SMART sant 786 834 IPR001005 -
Glsi02g2749 949 SUPERFAMILY Homeodomain-like 731 828 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2749 Glsi-ChrGlsi02 76926821 76937815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2749 730 837 MYB Transcription Factor Family AT5G59780 66.667 7.70e-45 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi02g2749 B56 3.4e-189 CL0020