Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2748 ATGCTCCAAACATACTGCATTTTGCTAATCTCCGTTCTTACTTCCTTTTCACCTTTTGGAAGAGCAATGCTGAACCTCACTCTTCCTGGTCAACATCCCGACCCCGATGCCGTGGTCCGAGAAGTTCACAGGAAAGTGATTGCTTCAATTGCAAGAAGGCAAATGTTAGGAGTATCAGAGATAGAAGAGTCGTCGTGTCTAACAGGGAACCCCATTGATGACTGCTGGAAATGCGACCCAGATTGGCCTAACAACCGCCAGAGGTTAGCTGACTGCGTAATTGGATTCGGGCAGTACGCAAAGGGAGGGAAGGATGGGCAATTCTACGTCGTCACAGACTCCTCAGACGACGATGCCGTCAACCCAAGACCCGGCACACTGAGATACGCAGTGATACAGAATGAACCCCTTTGGATTGTGTTCCCAAGTAACATGATGATCAAGCTGTCTCAGGAGCTCATCTTTAACAGCTACAAAACCCTCGATGGGCGTGGCGCAGATGTCCACATTGTCGGCGGTGGCTGCATTACTCTCCAGTATATAAGCAATGTCATCATACACAACATTCACGTCCACCATTGTCATCCCTCAGGTGAGGCAAACGTAAGGTCGAGCCCAGAGCATTACGGGTGGCGGACAGAATCGGACGGTGATGCGATATCCATATTCGGGTCAAAAGACATATGGATCGACCACTGCACCCTGTCTCGGTGCAAAGATGGGTTAATAGACGCGGTGATGGGGTCCACAGGCATCACCATATCCAACAACTTTTTCTCCCATCACAACGAGGTGATGCTGCTGGGACACAGCGATGATTACCTACCCGACTCCGGCATGCAGGTCACCATCGCCTTCAACCACTTCGGAGAGAAGCTGGTGCAGAGGATGCCGCGTTGCAGAAGGGGATACATCCACGTGGTCAACAACGACTACACGCATTGGGAGATGTATGCAATCGGAGGTAGCGGAAACCCAACCATAAACAGCCAGGGGAATAGGTATACGGCGCCCACGAATCCCTTCGCGAAGGAGGTGACCAAGAGAGTGGAGACAGAGGAAGGGAAATGGAAGGGCTGGAATTGGAGATCCGAGGGGGATATTATGGTAAATGGAGCATTCTTCGTGGCCTCCGGCGAAGGGGTTGAGGTTAAGTACGAGAAGGCCTACAGTGTGGAGCCCAAGTCCGCCGATCACATTGATCTCCTCATAATGCATGCTGGCGTACTCGGCGTTTCCAGGGACAACAACCTGGGAATGTGGAGTAGAGGACCCAGCGATGGTGAAATTTCGGAGTCCGGCCCAGACTACACGGACGATATGTCCCGGATTACAAGGTTGCTGCCACCTTCATCTACTGTCACTCTCATATCCTCCATCGTTGCGTCCTTGTGCTTATTATCTAATAACATACCCCTAACAACCATTCTATAA 1434 0.5105 MLQTYCILLISVLTSFSPFGRAMLNLTLPGQHPDPDAVVREVHRKVIASIARRQMLGVSEIEESSCLTGNPIDDCWKCDPDWPNNRQRLADCVIGFGQYAKGGKDGQFYVVTDSSDDDAVNPRPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSYKTLDGRGADVHIVGGGCITLQYISNVIIHNIHVHHCHPSGEANVRSSPEHYGWRTESDGDAISIFGSKDIWIDHCTLSRCKDGLIDAVMGSTGITISNNFFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDYTHWEMYAIGGSGNPTINSQGNRYTAPTNPFAKEVTKRVETEEGKWKGWNWRSEGDIMVNGAFFVASGEGVEVKYEKAYSVEPKSADHIDLLIMHAGVLGVSRDNNLGMWSRGPSDGEISESGPDYTDDMSRITRLLPPSSTVTLISSIVASLCLLSNNIPLTTIL 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2748 477 SMART amb_all 144 341 IPR002022 -
Glsi02g2748 477 FunFam Pectate lyase 69 411 - -
Glsi02g2748 477 PRINTS Pollen allergen Amb family signature 360 384 IPR018082 -
Glsi02g2748 477 PRINTS Pollen allergen Amb family signature 92 109 IPR018082 -
Glsi02g2748 477 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Glsi02g2748 477 PRINTS Pollen allergen Amb family signature 216 237 IPR018082 -
Glsi02g2748 477 PRINTS Pollen allergen Amb family signature 116 141 IPR018082 -
Glsi02g2748 477 PRINTS Pollen allergen Amb family signature 152 168 IPR018082 -
Glsi02g2748 477 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Glsi02g2748 477 PRINTS Pollen allergen Amb family signature 389 412 IPR018082 -
Glsi02g2748 477 SUPERFAMILY Pectin lyase-like 65 396 IPR011050 -
Glsi02g2748 477 Pfam Pectate lyase 154 333 IPR002022 -
Glsi02g2748 477 Gene3D - 69 411 IPR012334 -
Glsi02g2748 477 PANTHER PECTATE LYASE 18-RELATED 30 413 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2748 Glsi-ChrGlsi02 76922948 76925265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2748 1 460 Polysaccharide Lyase AT3G53190 76.119 0.0 689