Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi02g2742 | ATGGAGTGCATCGTAGAGCCCCAGATGTCCACCCTTGGAATATCTGATGGCGCTCTTTCGGGAAGAGGATATGGCCATTATGGTTGCTCGCACTATAAAAGGAGATGCAAGATCATAGCACCTTGTTGCAATGAAATATTTGATTGCAGACATTGCCATAATGAATCTAAGAATTCGATTGAGGTCGACCCTGTTGATCGCCATGACATTCCTCGTCACGATTTGAAGAGAGTCATCTGTTCCTTGTGTAGCACAGAGCAAGATGTTCGACAGATGTGCATTCAATGTGGTGTTTGCATGGGGAAATACTTCTGCTCTAAGTGCAAGTTTTTTGATGATGATGTATCGAAGAATCAATACCATTGCAATGAATGTGGTATCTGCAGAACTGGAGGTGAAGAGAATTTTTTCCACTGCAACAAATGTGGATGCTGCTATTCGACATTGTTGAAGGATTCACACCGCTGCGTGGAAAAAGCAATGCATCACAATTGCCCAGTTTGCTTTGAGTTTCTTTTCGACACCACAAGAGACATTACTGTATTACCATGTGGTCACACCATACATCTGGGATGTGTGAAAGAAATGGAGGAGCATTTCCAGTATTCTTGCCCTGTTTGCTCAAAATCTTTTTGCGACATGTCACGCGTGTGGGAGAGACTGGACCATGAGGTTGCATCCACAGCCATGCCTGAAATGTATCAAAATAAGATGGTTTGGATTCTCTGTAACGACTGTGGGGAAACATCGGAGGTAAGCTTTCACGTAGTGGCTCACAAGTGTGTTAAATGCAAATCCTACAACACTAGACAGATGCAAGGAGGGCCTGCTTCATGCTCATCCAGCATTGAAGAGGTTGCATCCACAGCCATGCCTGAAATGTATCAAAATAAGATGGTTTGGATTCTCTGTAACGACTGTGGGGAAACATCGGAGGTAAGCTTTCACGTAGTGGCTCACAAGTGTGTTAAATGCAAATCCTACAACACTAGACAGACGCAAGGAGGGCCTGCTTCATGCTCATCCAGCATTGAAGAGGTAGTTAGATGA | 1050 | 0.441 | MECIVEPQMSTLGISDGALSGRGYGHYGCSHYKRRCKIIAPCCNEIFDCRHCHNESKNSIEVDPVDRHDIPRHDLKRVICSLCSTEQDVRQMCIQCGVCMGKYFCSKCKFFDDDVSKNQYHCNECGICRTGGEENFFHCNKCGCCYSTLLKDSHRCVEKAMHHNCPVCFEFLFDTTRDITVLPCGHTIHLGCVKEMEEHFQYSCPVCSKSFCDMSRVWERLDHEVASTAMPEMYQNKMVWILCNDCGETSEVSFHVVAHKCVKCKSYNTRQMQGGPASCSSSIEEVASTAMPEMYQNKMVWILCNDCGETSEVSFHVVAHKCVKCKSYNTRQTQGGPASCSSSIEEVVR | 349 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi02g2742 | 349 | SMART | ring_2 | 165 | 207 | IPR001841 | - | |
| Glsi02g2742 | 349 | Pfam | CHY zinc finger | 29 | 110 | IPR008913 | GO:0008270 | |
| Glsi02g2742 | 349 | Gene3D | - | 297 | 341 | - | - | |
| Glsi02g2742 | 349 | Gene3D | - | 236 | 280 | - | - | |
| Glsi02g2742 | 349 | Pfam | Ring finger domain | 164 | 207 | IPR001841 | - | |
| Glsi02g2742 | 349 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 149 | 230 | IPR013083 | - | |
| Glsi02g2742 | 349 | ProSiteProfiles | Zinc finger RING-type profile. | 165 | 208 | IPR001841 | - | |
| Glsi02g2742 | 349 | Pfam | Zinc-ribbon | 212 | 270 | IPR039512 | - | |
| Glsi02g2742 | 349 | Pfam | Zinc-ribbon | 284 | 331 | IPR039512 | - | |
| Glsi02g2742 | 349 | SUPERFAMILY | Zinc hairpin stack | 101 | 158 | IPR037275 | - | |
| Glsi02g2742 | 349 | FunFam | RING finger and CHY zinc finger domain-containing protein 1 | 236 | 281 | - | - | |
| Glsi02g2742 | 349 | SUPERFAMILY | RING/U-box | 164 | 214 | - | - | |
| Glsi02g2742 | 349 | PANTHER | RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 | 284 | 334 | - | - | |
| Glsi02g2742 | 349 | SUPERFAMILY | CHY zinc finger-like | 25 | 100 | IPR037274 | GO:0008270 | |
| Glsi02g2742 | 349 | ProSiteProfiles | Zinc finger CTCHY-type profile. | 100 | 164 | IPR017921 | - | |
| Glsi02g2742 | 349 | MobiDBLite | consensus disorder prediction | 330 | 349 | - | - | |
| Glsi02g2742 | 349 | ProSiteProfiles | Zinc finger CHY-type profile. | 22 | 98 | IPR008913 | GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi02g2742 | Glsi-ChrGlsi02 | 76851501 | 76854579 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi02g2742 | 286 | 343 | C2H2 Transcription Factor Family | AT3G18290 | 43.333 | 1.74e-07 | 51.2 |