Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2740 ATGGAGATCATAGAGGAACTTGTGGTGTGCAAGGATCAAGCGCAAATCATGAAGGGCAAGCGCACCAAGCGTCAGAGGCTACCATCTCCACTTAGGCTAGCCATGCCTAGTTCTAGTTCTTCTAGCGCCCCAGACGACAATTCAGGAGGCTTTGACATCGATACAACCTCAACTGAATTCAGGGAAAGCACAGAAGAGGAGGAGGACATGGCTAACTGTTTGATTCTTCTGGCTCAAGGCCATACACGGAAAGCTTCTTCAGAGGCCGTGCCTTCACCTGACAATAGTAATAATAAGGCAGCAGGGCTATACCTTTACGAGTGCAAGACGTGCAACCGATGCTTCCCTTCATTTCAAGCGCTTGGGGGACACAGAGCCAGCCACAAGAAACCCAAGCCAAATACAGAATCAAAGCAGCTGCAAGCAGTTACTTTTGCGAATGAATACGGTAATCGTTATGACCCCACGACAAGCACCACCCTTTCCTTGCAACTATCTAGCAGCAGCAGTACTAGATCGAAGGTTCATGAGTGTTCCATATGTGGGGCTGAGTTCTCATCTGGTCAAGCCTTGGGGGGTCATATGAGGCGCCACAGAACATTAGTCAACGCATCTACTAGTGCGGAGAATGGTGGGAGCACACAATTCCAGGAGCCCAAGAAACCCAGGAACGTTTTGAAGTTGGACTTGAATCTTCCGGCACCGGACGAGGATCACAGAGAATCCAAGTTCCCGTATCAGTCCAGAGAAAACGTTCTTGTCTTCTCTGCATCTTCTTTGGTGGATTGCCATTACTGA 798 0.49 MEIIEELVVCKDQAQIMKGKRTKRQRLPSPLRLAMPSSSSSSAPDDNSGGFDIDTTSTEFRESTEEEEDMANCLILLAQGHTRKASSEAVPSPDNSNNKAAGLYLYECKTCNRCFPSFQALGGHRASHKKPKPNTESKQLQAVTFANEYGNRYDPTTSTTLSLQLSSSSSTRSKVHECSICGAEFSSGQALGGHMRRHRTLVNASTSAENGGSTQFQEPKKPRNVLKLDLNLPAPDEDHRESKFPYQSRENVLVFSASSLVDCHY 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2740 265 ProSitePatterns Zinc finger C2H2 type domain signature. 178 198 IPR013087 -
Glsi02g2740 265 Gene3D Classic Zinc Finger 104 198 - -
Glsi02g2740 265 MobiDBLite consensus disorder prediction 17 65 - -
Glsi02g2740 265 Pfam C2H2-type zinc finger 106 131 - -
Glsi02g2740 265 Pfam C2H2-type zinc finger 175 199 - -
Glsi02g2740 265 PANTHER ZINC FINGER PROTEIN ZAT5 57 241 - -
Glsi02g2740 265 ProSiteProfiles Zinc finger C2H2 type domain profile. 176 198 IPR013087 -
Glsi02g2740 265 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Glsi02g2740 265 SUPERFAMILY beta-beta-alpha zinc fingers 105 198 IPR036236 -
Glsi02g2740 265 SMART c2h2final6 106 128 IPR013087 -
Glsi02g2740 265 SMART c2h2final6 176 198 IPR013087 -
Glsi02g2740 265 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Glsi02g2740 265 MobiDBLite consensus disorder prediction 32 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2740 Glsi-ChrGlsi02 76836947 76837744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2740 9 265 C2H2 Transcription Factor Family AT2G28200 43.493 5.49e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi02g2740 zf-C2H2_6 1e-12 CL0361