Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2709 ATGAATCAAGAATTGGCGATTGCTTTGGAGGTTCAGTCTCTGAATCAATGCAATGCACTTGTTCCAACTTCGGTTTCAGAAAATGACTCTCGGTCTGAGTCACAGTCGAAGTCTTCTATGCATGTTTCTGAGAATCCCAGCTGCAGAGTAGTTAAAGGTTCTGTTGTGAATGGTTATATTGTTTATACTCGAGTAAAGAAATCACGGCATTTATGTAACGGCCCTTCTGAGAATGGAAAACCTAAGAGACTCAAGACCTCTGAAGAGCGGGAGGCCCATGCAGACCTTCCAGTTGTGGATGGTGGAGGTGGCCTAGATGTAGACAATGTAGAAACTAAATTCGAATTTGAAGTCGATTGCAGTATGGAAAATCCTATTAAGTGTAATGAGTCAAAAAGCGAGCCCGCGCAGTCTCTTGCTGGGGAAGGTGGCTCCAATGAGGTTCCTGTTGAGATTTCTAACGACAGTGAGGTAAAGAAACATGTTGTGAAAAAGACATTAAAGCGGTTTACGCGATCAACATTGAAACCAAAGGTTGAATCTAGTGATACGACGGAGACTGCGCCAGAAGCTGCTCAGACAGCAAATACTAAACCAGATGAGAAGGGGAACGCTTCTCTAAGTGCATTAAAAACTCCAAGAAATAAGTTGGAACTTAAGATGTCCAAGAAGATCCTGCTCAGCAAGAAGCCTATGACTGTCAAGGAACTCTTCGATACTGGTTTATTGGATGGGGTTGCAGTAGTTTACATGGGCGGCAAGAAGGCTTCTGGTCTGCGGGGTGTTATTAAAGATGGAGGAATTTTGTGTTCATGCTGTCTGTGCAATGGACGCAGGGTTATTCCACCTTCCCAATTCGAGATTCATGCTTGCAAAACATATAGGCGAGCCGCGCAGTATATTTGCCTTGAAAATGGGAAGAGCTTGCTTGAACTATTGCGAGCATGCAGGGCGGGTCCACTGCATACGTTGGAGACGACAATTCAAAATGTTGTTTGTTCTCCACCTGAAGAGAAATATTTCACTTGTAAAAGGTGTAAAGGATGTTTCCCCTCTTCATGTGTGGAAAGAGTAGGGCCTATATGCAAAACTTGTGTGGAATCAAAGGAATCTAAAGACTCTATTGATGCAGTTGGCAAAAGAGTTAGGTCCCCGAGACCAGTGTTGGTCCCCAAGCCATGCAGTATTTCTGAGCTGTGTAACTCGTCGCAACTTGAGAGACATTGGAAGAAAAGAACAAAGACGTCAAAACGAGTTAGCTGCTCAAAGTCTTTCAAGTGTGCTTCGGTGCCTATCCTATCACAAAAGAAGAGTCTGTGGAGGATGAAAAAGAAGTCATCAAAATTGTCTATAAAATTGAAGACTCCGAGAATTACGTCAAACTCAAAGTTTTTATCTTCACAAAGTCAAAATAAGAGTCAATGGAGGATCACAAAAAAGGATCAGCGGTTACATAAATTAGTTTTTGAGGAAGGTGGATTGCCTGATGGAACTGAAGTAGCTTATTATGCACGTGGACAGAAACTGCTTGAGGGTTACAAAAAGGGCTTTGGAATACTTTGTCGATGCTGCAACTCTGAGGTCAGCCCTTCACAGTTTGAAGTCCATGCAGGCTGGGCTTCTCGCAAGAAACCTTATGCATACATCTACACTTCAAACGGGGTGTCTCTCCATGAGTTAGCAATTTCACTCTCAAAAGGTCGCAAATACTCTGCAAAGGATAATGATGATCTATGCATTATCTGTTGGGATGGTGGAAGTCTGTTGCTTTGTGATGGATGCCCAAGGGCATTCCATAAAGATTGTGCATCTCTGTCAAGTATTCCACGTGGTGACTGGTACTGTAAATTTTGCCAAAACATGTTCCAGAGAGAAAGGTTTGTGGCACACAATGCTAATGCTGTGGCAGCTGGAAGGGTTGAAGGGGTTGATCCTATTGAACAGATAACCAGGAGATGCATTCGCATTGTCAAAGACATTGAAGCTGAGCTTAGCGGCTGTGCTTTATGCAGGGGTTATGACTTCAGCAGATCAGGATTTGGTCCACGCACAATTATACTGTGTGACCAGTGTGAAAAGGAATATCATGTTGGCTGTTTGAGGGATCATAAAATGGCATATTTGAAGGAATTACCAGAAGGAAAGTGGTTTTGTTGCTTGGATTGCAATAGAATACATTCGACTTTGGAGAATCTTCTGATTAGGGGGGCTGAGAAACTACCTAACTCTTTCTTGGATGTTATAAAGACAAAGCAAGAGGAAAAAGGTTTAGAGTCCCTCAATGATATTGATGTAAGATGGAGGCTTCTTAATGGCAAAATTGCTTCTCCAGAAACTAGGCCATTGCTTTCTGAGGCTGTTTCAATTTTTCATGAATGCTTCGATCCTATAGTTGATTCAACTAGTGGACGTGACCTTATCCCGGCCATGGTTTATGGAAGGAATGTGCGGAGTCAAGAGTTTGGAGGAATGTATTGTGCAATACTAATGGTCAATTCATCTGTTGTATCTGCTGGAATGCTTCGAATTTTTGGCAGTGATGTGGCAGAACTTCCTTTAGTTGCAACAAGTAATGGTAATCATGGAAAGGGCTACTTCCAATTACTCTTCTCCTGCATTGAGAGACTGCTGGCTTTCTTGAACGTGAAGAACCTTGTGCTTCCAGCAGCTGAAGAAGCGGAATCCATATGGACAGATAAATTTGGGTTCAACAAGATGAAACCAGATCAGATTAGCAACTATAGAAAGAACTGCAGTCAGATGGTGACATTCAAAGGGACGTCCATGCTTCAGAAAATGGTTCCCCCATGTCGAGCCATCAGTAGTCAACTATGA 2835 0.4272 MNQELAIALEVQSLNQCNALVPTSVSENDSRSESQSKSSMHVSENPSCRVVKGSVVNGYIVYTRVKKSRHLCNGPSENGKPKRLKTSEEREAHADLPVVDGGGGLDVDNVETKFEFEVDCSMENPIKCNESKSEPAQSLAGEGGSNEVPVEISNDSEVKKHVVKKTLKRFTRSTLKPKVESSDTTETAPEAAQTANTKPDEKGNASLSALKTPRNKLELKMSKKILLSKKPMTVKELFDTGLLDGVAVVYMGGKKASGLRGVIKDGGILCSCCLCNGRRVIPPSQFEIHACKTYRRAAQYICLENGKSLLELLRACRAGPLHTLETTIQNVVCSPPEEKYFTCKRCKGCFPSSCVERVGPICKTCVESKESKDSIDAVGKRVRSPRPVLVPKPCSISELCNSSQLERHWKKRTKTSKRVSCSKSFKCASVPILSQKKSLWRMKKKSSKLSIKLKTPRITSNSKFLSSQSQNKSQWRITKKDQRLHKLVFEEGGLPDGTEVAYYARGQKLLEGYKKGFGILCRCCNSEVSPSQFEVHAGWASRKKPYAYIYTSNGVSLHELAISLSKGRKYSAKDNDDLCIICWDGGSLLLCDGCPRAFHKDCASLSSIPRGDWYCKFCQNMFQRERFVAHNANAVAAGRVEGVDPIEQITRRCIRIVKDIEAELSGCALCRGYDFSRSGFGPRTIILCDQCEKEYHVGCLRDHKMAYLKELPEGKWFCCLDCNRIHSTLENLLIRGAEKLPNSFLDVIKTKQEEKGLESLNDIDVRWRLLNGKIASPETRPLLSEAVSIFHECFDPIVDSTSGRDLIPAMVYGRNVRSQEFGGMYCAILMVNSSVVSAGMLRIFGSDVAELPLVATSNGNHGKGYFQLLFSCIERLLAFLNVKNLVLPAAEEAESIWTDKFGFNKMKPDQISNYRKNCSQMVTFKGTSMLQKMVPPCRAISSQL 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2709 944 ProSitePatterns Zinc finger PHD-type signature. 579 618 IPR019786 -
Glsi02g2709 944 Pfam PHD-finger 579 620 IPR019787 -
Glsi02g2709 944 MobiDBLite consensus disorder prediction 70 104 - -
Glsi02g2709 944 SUPERFAMILY FYVE/PHD zinc finger 567 623 IPR011011 -
Glsi02g2709 944 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 822 907 IPR016181 -
Glsi02g2709 944 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 663 725 IPR013083 -
Glsi02g2709 944 SMART PHD_3 578 619 IPR001965 -
Glsi02g2709 944 SMART PHD_3 666 723 IPR001965 -
Glsi02g2709 944 MobiDBLite consensus disorder prediction 23 45 - -
Glsi02g2709 944 MobiDBLite consensus disorder prediction 129 150 - -
Glsi02g2709 944 MobiDBLite consensus disorder prediction 81 96 - -
Glsi02g2709 944 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 663 725 - -
Glsi02g2709 944 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 565 642 - -
Glsi02g2709 944 Pfam Tify domain binding domain 261 316 IPR032308 -
Glsi02g2709 944 Pfam Tify domain binding domain 512 562 IPR032308 -
Glsi02g2709 944 ProSiteProfiles Zinc finger PHD-type profile. 576 621 IPR019787 -
Glsi02g2709 944 MobiDBLite consensus disorder prediction 177 211 - -
Glsi02g2709 944 PANTHER AUTOIMMUNE REGULATOR 70 933 - -
Glsi02g2709 944 MobiDBLite consensus disorder prediction 23 46 - -
Glsi02g2709 944 SUPERFAMILY FYVE/PHD zinc finger 658 720 IPR011011 -
Glsi02g2709 944 MobiDBLite consensus disorder prediction 174 212 - -
Glsi02g2709 944 FunFam PHD finger family protein 764 933 - -
Glsi02g2709 944 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 565 648 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2709 Glsi-ChrGlsi02 76541914 76549601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2709 223 934 PHD Transcription Factor Family AT2G36720 56.612 0.0 836
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Glsi02g2709 TDBD 4.1e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g0343 11 2203795 2213748 Glsi02g2709 02 76541914 76549601 CCT