Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2697 ATGTTGCTCTTTGGCGAGCGAAATTTTTTACATAAAAGGAGTCATCACCCCGGAAAATTCTTACTTCTCAGTAAACGCTGGGATCGTACATCGAAGTGTCACCAAGATCCCTCTGGAACACCTTTCATCTATTCGTTCTCATTGGCATATTCTGCTATGGCGGAAGCAGTTTCAGGGGACTCCTCCAACCCTACTCCGCCGACGGCGCCGGAGCCGGCCCACAAAAGTTGGGCTGATGAGGCGGAATTAGTTTCAGGGGACTCCTCCAACCCTACTCCGCTGAAGGCGCCGGCGCCGGCCCACAAAAGTTGGGCTGATGAGGCGGAAGAAGTTCCAGAAGAAACGAATGCTACCTCGACGAGTTCGACAACAGTCTCATCGCTCAACGTTGAGGAATTAACAATCGACGAGAACAAGAAGGCTCCTAAAGTTTTGGACGAACCCGATGACTCCAACATCCAAGCGGTTACATCGGGTGATACTCCGTATACTTCTGCGAGCACCTTTGAAGATTTAAATCTGTCTCCAGAGCTGCTAAAGGGATTGTATGTTGAGATGAAATTCCAAAAGCCTAGCAAAATTCAAGCTATCAGTTTGCCAATGATTTTGAACCCTCCTCATAAGGATTTGATAGCTCAGGCACATAATGGTTCTGGCAAAACAACTTGTTTTGTGCTTGGGATGCTGAGTCGTGTTGATCCTAAGCTGCAGGCTCCTCAGGCTCTTTGCATTTGTCCAACAAGAGAATTGGCTATTCAGAATACGGAGGTTCTTAGAAAGATGGGGAAGTACACAGGGATTAATTCAGAATGTGCCATTCCAGCAGACAGCAAAGATTATATGACAATATCAAAACGACCACCTATAATGGCACAAGTGGTGATTGGGACTCCTGGTACGATAAAGAGATGGATGTCATATAAGAAACTGGGTGTAAGCAGATTAAAAATTCTAGTTTTTGACGAGGCCGATCAAATGCTTGCTGAGGATGGTTTTAGGGATGATTCTTTGAGGATAATGAAAGAAATAGAAAAAGTTAATCCTCACTGTCAGGTTCTTCTGTTTTCTGCTACATTTAATGACAATGTTAAAAATTTTGTTTCAAGAACAGTTAAGACAGATCATAATCAACTTTTTGTGAAGAAAGAAGAACTGTCTTTAGAGGCAGTGAAGCAATACAAGGTGAGATGTGCTGATGAACTCTCTAAGATTGAAGTGGTCAAAGATTACATATTTGAAATAGGAGAGAATGTAGGGCAAACTATTATATTTGTGCGCACAAGAAATAGTGCAAGGATGTTGCATAAAGCACTTGTTGATTTGGGCTATGAGGTAACTTCCATACAAGGTGCTCTTGAGCATGAAGAGAGAGACAAGATTGTCAAGGAGTTCAGAGATGGTTTGACTCAAGTACTTATATCAACTGATGTTCTTGCCCGGGGCTTTGATCAGCAGCAGGTGAATTTGGTTATCAATTATGACCTTCCAGTGAAACATACTGCTGAGTATACCCGTGAAATGGAGCCCGATTGTGAGATTTATTTGCACAGGGTTGGTAGGGCTGGACGTTTTGGGCGCAAAGGTGCTGTGTTTAACCTGATCTGCGGTGAAAGGGATGAAATTCTCATGGCAAAGATTGAGAAGCACTTTGGCACCCATGTAACTGAGGTCCGTGAAAAAAGCGTTGAAGATTATAAACGCGCTCTTAGGGAGGCTGGTTTACTGCAATGA 1731 0.435 MLLFGERNFLHKRSHHPGKFLLLSKRWDRTSKCHQDPSGTPFIYSFSLAYSAMAEAVSGDSSNPTPPTAPEPAHKSWADEAELVSGDSSNPTPLKAPAPAHKSWADEAEEVPEETNATSTSSTTVSSLNVEELTIDENKKAPKVLDEPDDSNIQAVTSGDTPYTSASTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILNPPHKDLIAQAHNGSGKTTCFVLGMLSRVDPKLQAPQALCICPTRELAIQNTEVLRKMGKYTGINSECAIPADSKDYMTISKRPPIMAQVVIGTPGTIKRWMSYKKLGVSRLKILVFDEADQMLAEDGFRDDSLRIMKEIEKVNPHCQVLLFSATFNDNVKNFVSRTVKTDHNQLFVKKEELSLEAVKQYKVRCADELSKIEVVKDYIFEIGENVGQTIIFVRTRNSARMLHKALVDLGYEVTSIQGALEHEERDKIVKEFRDGLTQVLISTDVLARGFDQQQVNLVINYDLPVKHTAEYTREMEPDCEIYLHRVGRAGRFGRKGAVFNLICGERDEILMAKIEKHFGTHVTEVREKSVEDYKRALREAGLLQ 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2697 576 Gene3D - 146 384 IPR027417 -
Glsi02g2697 576 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 167 196 IPR014014 GO:0003724
Glsi02g2697 576 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 201 377 IPR014001 -
Glsi02g2697 576 MobiDBLite consensus disorder prediction 133 147 - -
Glsi02g2697 576 Pfam DEAD/DEAH box helicase 193 365 IPR011545 GO:0003676|GO:0005524
Glsi02g2697 576 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 239 545 IPR027417 -
Glsi02g2697 576 MobiDBLite consensus disorder prediction 82 165 - -
Glsi02g2697 576 CDD DEADc_DDX19_DDX25 174 378 - -
Glsi02g2697 576 Gene3D - 387 569 IPR027417 -
Glsi02g2697 576 Pfam Helicase conserved C-terminal domain 404 525 IPR001650 -
Glsi02g2697 576 SMART helicmild6 432 525 IPR001650 -
Glsi02g2697 576 MobiDBLite consensus disorder prediction 151 165 - -
Glsi02g2697 576 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 406 566 IPR001650 -
Glsi02g2697 576 CDD SF2_C_DEAD 390 534 - -
Glsi02g2697 576 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 127 548 - -
Glsi02g2697 576 SMART ultradead3 187 393 IPR014001 -
Glsi02g2697 576 MobiDBLite consensus disorder prediction 114 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2697 Glsi-ChrGlsi02 76468617 76473313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2697 160 557 Eukaryotic Initiation Factors Gene Family AT1G72730 35.784 8.70e-68 224