Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2695 ATGGCGAATTCTCCGACGGTAGCTACCGCCCCGGCTTCGCTTTACGTCGGTGACCTCCACCCTGACGTCACCGATAGTCAGCTGTTCGACGCATTCTCCGAGTTCAAGAGCGTCACTTCTGTTCGGGTCTGTAGGGACTCGTCAACCGGAAGGTCGCTCTGTTACGGCTACGTCAACTTTTGCTCTCCCCAAGACGCAATTCGTGCTATTGAGGTCAAGAAACATTCTACACTGAATGGAAAAGCGGTAAGGGTCATGTGGTCAAATCGTGATCTTGATGCAACTAAAAGTGGCATAGGCAACGTGTTTGTTAAGAACCTGGCTGAATCAATGGACAACGTGGGATTACAAGATTTGTTTCAAAATTTTGGTAATATTTTGTCCAGCAAAATTGTCATGTCTGAGGATGGCAAGAGCAAAGGATATGGTTTTGTTCAATTTGAGTTAGAGGAATCTGCAAATGCTGCCATTGAGAAGTTGAATGGCTCTACTGTTAGAGACAAGCAGATCTATGTTGGAAAGTTTGTCAGAAAAAGTGACCGCATTTTGCCTGGTCCTGATGCCAAATATACAAATTTGTACATTAAGAATTTGGACCCAAAAACTACAGAAGAGGTTCTGAAGGAAAAGTTCTCCTCTTTCGGGAAAATTGTTAGCTTAGTTATTGCAAAGGATGACAATGGGATATCAAAGGGTTTTGGCTTTGTGAACTTTGATAACTCAGATGATGCTAGACAGGCAATGGAAGCAATGAATGGATCACAACTTGGTTCAAAGATTCTATATGTAGCCAGGGCACAAAAGAAGGCCGAGCGTGAGCATATTTTGCACCATCAGTTTGAGGAGAAACGTAAGGAACAATTCTTAAAATACAAGGTATCAAATGTCTATGTGAAGAACATTGATGATGACGCTAGTGATGAAGAACTGCAGAATCTTTTTGGTGCATGTGGCACAATAACATCTGCAAAAATTATGCGAGATGACAAAGGGATAAGCAAAGGGTTTGGTTTTGTCTGCTTCTCTACCCCCGAGGAGGCGAATAAAGCTGTGAACACTTTTCATGGGTGTATGTTTCATCGCAAACCGCTATATGTTGCTATCGCTCAGAGGAAGGAGGACAGGCAAGCACAATTACATCTCCAGCATGCACAGCGATTATCAGGATTAACTGGTTCTTCAATTGCTGTTATCCCTGGTGGATATTCTCCTTACTACTATGCAGCTCCTGGTGCTGTTTCACAGCTGCCTTCTCATCATGGGCTAATGTACCAACCTCTGGGATTGACGCCAGGATGGAGGCCTAATGGCTTTGCACCTCCTACCAGACCATTTCAACAGTCACCAGTTCCTATGGTTTCTAATACTACTAGGCAACATTGGCAAAACAGGGGCAGGATGAATGGGCCTACAATTTCACAGGGAAATGCTCACTCTGGTACACACAAGTCACAATCGCGTCAGACTTTTCAGTCAGTGACCCCTTCAAAAGATTCAAGTACTCAGCAGCGGACTGGGCGAACCAAGTATGTGCCCAGCGGGCGCCAGAATGAGACTGAAAAAGTATCTAGAGTCTCATCTGCTGGAGGATCCCAGGGATCAGAAATGCTACATAGCATGCTTGCTGCTGCTACTAGTGAGCAGCAGAAACAGATACTTGGTGAACATCTTTATCCACTAGTCCAGAAGCTCAAGCCTGTCCTAGCAGCAAAGATTACTGGGATGCTTTTGGAGATGGACAATGGAGAACTGCTGCTTCTCCTGGAGTCTCCAGAGTCTCTTGCTGCGAAGGTGGAAGAAGCTGTGCAAGCGCTCAAGAACTCCAAGGCCAAAGTTTCTGGCCAAGATGCACTTCATTCAAAATACCTTTCAGCTGAGGTTGCAGTTAACTGA 1893 0.4496 MANSPTVATAPASLYVGDLHPDVTDSQLFDAFSEFKSVTSVRVCRDSSTGRSLCYGYVNFCSPQDAIRAIEVKKHSTLNGKAVRVMWSNRDLDATKSGIGNVFVKNLAESMDNVGLQDLFQNFGNILSSKIVMSEDGKSKGYGFVQFELEESANAAIEKLNGSTVRDKQIYVGKFVRKSDRILPGPDAKYTNLYIKNLDPKTTEEVLKEKFSSFGKIVSLVIAKDDNGISKGFGFVNFDNSDDARQAMEAMNGSQLGSKILYVARAQKKAEREHILHHQFEEKRKEQFLKYKVSNVYVKNIDDDASDEELQNLFGACGTITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNTFHGCMFHRKPLYVAIAQRKEDRQAQLHLQHAQRLSGLTGSSIAVIPGGYSPYYYAAPGAVSQLPSHHGLMYQPLGLTPGWRPNGFAPPTRPFQQSPVPMVSNTTRQHWQNRGRMNGPTISQGNAHSGTHKSQSRQTFQSVTPSKDSSTQQRTGRTKYVPSGRQNETEKVSRVSSAGGSQGSEMLHSMLAAATSEQQKQILGEHLYPLVQKLKPVLAAKITGMLLEMDNGELLLLLESPESLAAKVEEAVQALKNSKAKVSGQDALHSKYLSAEVAVN 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2695 630 CDD RRM4_I_PABPs 294 371 - -
Glsi02g2695 630 CDD RRM3_I_PABPs 190 269 - -
Glsi02g2695 630 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Glsi02g2695 630 Pfam Poly-adenylate binding protein, unique domain 540 605 IPR002004 GO:0003723
Glsi02g2695 630 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Glsi02g2695 630 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
Glsi02g2695 630 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 83 IPR000504 GO:0003723
Glsi02g2695 630 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Glsi02g2695 630 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 260 IPR000504 GO:0003723
Glsi02g2695 630 SUPERFAMILY RNA-binding domain, RBD 291 384 IPR035979 GO:0003676
Glsi02g2695 630 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 533 610 IPR002004 GO:0003723
Glsi02g2695 630 SMART poly_2 545 608 IPR002004 GO:0003723
Glsi02g2695 630 MobiDBLite consensus disorder prediction 434 533 - -
Glsi02g2695 630 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Glsi02g2695 630 SUPERFAMILY RNA-binding domain, RBD 181 272 IPR035979 GO:0003676
Glsi02g2695 630 CDD RRM2_I_PABPs 98 174 IPR045305 -
Glsi02g2695 630 FunFam Polyadenylate-binding protein 182 276 - -
Glsi02g2695 630 SMART rrm1_1 13 86 IPR000504 GO:0003723
Glsi02g2695 630 SMART rrm1_1 295 367 IPR000504 GO:0003723
Glsi02g2695 630 SMART rrm1_1 101 173 IPR000504 GO:0003723
Glsi02g2695 630 SMART rrm1_1 192 264 IPR000504 GO:0003723
Glsi02g2695 630 SUPERFAMILY PABC (PABP) domain 454 618 IPR036053 GO:0003723
Glsi02g2695 630 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Glsi02g2695 630 SMART rrm2_1 192 264 IPR003954 GO:0003676
Glsi02g2695 630 SMART rrm2_1 101 173 IPR003954 GO:0003676
Glsi02g2695 630 SMART rrm2_1 295 367 IPR003954 GO:0003676
Glsi02g2695 630 Gene3D - 100 178 IPR012677 -
Glsi02g2695 630 Gene3D - 2 98 IPR012677 -
Glsi02g2695 630 Gene3D - 179 275 IPR012677 -
Glsi02g2695 630 MobiDBLite consensus disorder prediction 448 533 - -
Glsi02g2695 630 FunFam Polyadenylate-binding protein 4 96 - -
Glsi02g2695 630 FunFam Polyadenylate-binding protein 277 385 - -
Glsi02g2695 630 SUPERFAMILY RNA-binding domain, RBD 12 179 IPR035979 GO:0003676
Glsi02g2695 630 Gene3D - 531 625 - -
Glsi02g2695 630 FunFam Polyadenylate-binding protein 97 181 - -
Glsi02g2695 630 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 12 606 IPR006515 GO:0003723
Glsi02g2695 630 PANTHER RNA BINDING PROTEIN 12 80 - -
Glsi02g2695 630 Gene3D - 276 383 IPR012677 -
Glsi02g2695 630 FunFam Polyadenylate-binding protein 531 617 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2695 Glsi-ChrGlsi02 76442485 76447382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2695 12 628 Eukaryotic Initiation Factors Gene Family AT2G36660 52.244 0.0 604
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2695 02 76442485 76447382 Glsi11g1040 11 6551251 6558592 CCT
Glsi02g2695 02 76442485 76447382 Glsi02g2695 02 76442485 76447382 ECH