LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi02g2683	ATGGCCTCCTGCGACGACGACGACTTCTCACTTCTCGGTGACGATCATCACCAATCAAGCGCAGGCCCCCACCACCACCTCCACCAACCCTACGCGCCGCACTCCTTCTCAAGCGCCGTCACACCTGCCCAGCCGGTCCAATCGGAACCGGTAGGGGACACCAGCGAAGTTTACGGATTTGATAACGATGCTGATGGGAACGACAAGAGAAACGATCGGGAGGAGGTCGGCGACGGAACGACGTCTTATGGCTACAAAAGGCCCAAGCTTTCAAGCGGCGGAGAGTACAGGAAGGACAGGGAGGAGTGGAGCGACGCGGCGATTGTGTGCCTTTTGGAGGCTTATACGGAGAAGTTCACTCAGCTGAATCGAGGGAACCTGAGAGGTAGAGATTGGGAGGAGGTGGCGGCCATAGTCAGTGAGCGGTGCGAGAACCAAACGAAGAGTGTGGAGCAATGTAAGAATAAAGTTGATAACTTGAAGAAGAGGTACAAGTTGGAAAGACATAGGATGAGTAATGGCTGCATTTCGGCCAGTCACTGGCCTTGGTTCAAGCAGATGGAACAGATCGTCGGGAATTCGCTGCCAGCGAAGTTTGTGCCGGATGAGGATAAGGGGGTCGGTTCTGGTGGGAATTCACCGAGGCAATCAAAGAGATATGGAGTGGCAATGCCCAGCAGTGGAGGTCAACTAAATAGCATGAAGTCCAAAGCGATGTCAAACCTTAGATGGCGCAGGGTAGTCTTCAAAATTAGTGGAGCAGCTCTTACTGGATCTGATACCTGCAACATTGACCCAAAGGTGGCCATGTTAGTTTCAAAAGAAGTTGCAATAGCTTCCCGCCTTGGTGTGGAGGTGGCAATTGTTGTTGGAGGTCGTAACTTCTTCTGCGGAGATGCATGGGTTACTGCAACAGGATTAGAAAGATGTACTGCATACCAAGTCGGCATGATGGCAACTGTGATGAATTCTATATTACTTCAATCAACCCTAGAGAAGATGGGTGTTCAGACTCGTGTACAAACTACCATTGCCATGCACGAGTTTGCTGAACCATATAATAGACAGCGGGCCATCAGACATCTTGAGAAAGGCAGAGTTGTTATATTTGGTGGCATTGGTTTTGGCACTGGGAATCCACTCTTTTCGACTGACATAGCTGCTGCTCTTCGAGCTTCAGAGATTAATGCTGAGGCAGTCGTCAAGGGTACTAATGTAGATGGTGTATATGACTGCAACTCCCGAGACAGCAATTTCACTTTTGAGCACATATCCTTTAGGGAGCTGGTTTCAAGAGGTGCCACCTCTATGGACATGTCAGCATTGACATTCTGTGAGGAAAATGCTATTCCTGTTGTGGTTTTTAACCTATTGGAGCCTGGGAACATCTCAAAAGCATTGTGTGGAGAGCAAGTTGGTACACTAATTGACCAAACTGGAGCAATAAGCTAA	1452	0.4924	MASCDDDDFSLLGDDHHQSSAGPHHHLHQPYAPHSFSSAVTPAQPVQSEPVGDTSEVYGFDNDADGNDKRNDREEVGDGTTSYGYKRPKLSSGGEYRKDREEWSDAAIVCLLEAYTEKFTQLNRGNLRGRDWEEVAAIVSERCENQTKSVEQCKNKVDNLKKRYKLERHRMSNGCISASHWPWFKQMEQIVGNSLPAKFVPDEDKGVGSGGNSPRQSKRYGVAMPSSGGQLNSMKSKAMSNLRWRRVVFKISGAALTGSDTCNIDPKVAMLVSKEVAIASRLGVEVAIVVGGRNFFCGDAWVTATGLERCTAYQVGMMATVMNSILLQSTLEKMGVQTRVQTTIAMHEFAEPYNRQRAIRHLEKGRVVIFGGIGFGTGNPLFSTDIAAALRASEINAEAVVKGTNVDGVYDCNSRDSNFTFEHISFRELVSRGATSMDMSALTFCEENAIPVVVFNLLEPGNISKALCGEQVGTLIDQTGAIS	483

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi02g2683	483	CDD	AAK_UMPK-PyrH-Ec	245	477	IPR015963	GO:0005737\|GO:0006221\|GO:0033862
	Glsi02g2683	483	Gene3D	-	239	477	IPR036393	-
	Glsi02g2683	483	Gene3D	-	103	166	-	-
	Glsi02g2683	483	MobiDBLite	consensus disorder prediction	34	51	-	-
	Glsi02g2683	483	MobiDBLite	consensus disorder prediction	202	233	-	-
	Glsi02g2683	483	PANTHER	URIDYLATE KINASE	96	482	-	-
	Glsi02g2683	483	Hamap	Uridylate kinase [pyrH].	242	477	IPR015963	GO:0005737\|GO:0006221\|GO:0033862
	Glsi02g2683	483	SUPERFAMILY	Carbamate kinase-like	243	476	IPR036393	-
	Glsi02g2683	483	Coils	Coil	143	170	-	-
	Glsi02g2683	483	MobiDBLite	consensus disorder prediction	62	80	-	-
	Glsi02g2683	483	FunFam	Aspartate/glutamate/uridylate kinase family protein	103	166	-	-
	Glsi02g2683	483	MobiDBLite	consensus disorder prediction	1	97	-	-
	Glsi02g2683	483	Pfam	Amino acid kinase family	246	456	IPR001048	-
	Glsi02g2683	483	FunFam	Uridylate kinase isoform A	236	482	-	-
	Glsi02g2683	483	Pfam	Myb/SANT-like DNA-binding domain	100	190	IPR044822	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi02g2683	Glsi-ChrGlsi02	76350431	76354481	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi02g2683	77	194	Trihelix Transcription Factor Family	AT3G14180	40.000	6.22e-18	84.3

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	Trihelix	Glsi02g2683		AA_kinase	1.1e-24	No_clan