Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2669 ATGGCCATGGGAAGGCGCGCTGCTCGTCTTCTTCTTCCCAATTTGCAAGTAGCACTCCGGAAGGAACCCTGCAATTCAACTTCTGTCCTTCTTTCACTTTCCTTCTGCTCGGGACCAGTTTCAAATACACTTGCTGAAACCCACTGTACCCAAAACAGTGAGCTTCCGTTAGAAAATAACTATCCATCCGATACCCAAGAACAAGAACGTCTTCAACAAATTGGTAAGCTTCGAAATTTACTCGAAGAGGGTCGCGGCGATGCTGCCAAAAGGTTTATCGAAACCCTTATTCTCTCTAAAATCCCATTTTCTTCTCCCTTCGAACTTTTCGCCTTCGTCTCCTACTCTTCACCCTCCTTGAAACCCGTCTTCTCAAATTTGCTGTTACGGGTTTGCTCCGAGTCCAAAATGATCAATGAAGCTATTGAATTGTACTCTTTGATGAGGAAAGATGGTATGCTTCCTTCGACAGGTTCTGTGAACCGGTTACTCGAAACTTTGGTGAATTCGAAACAGTATGAGAAAACTATTAATCTATTCTTGGATATTGTGGAGTCTGGAATTCGACCCAATTCTTTCTCCTACGGTAAAGTTATTCAGGCGGCAGTGATGTTGAAGGATTTAAAACGGGGTTTTGAATTTATGAATGACATGGAGAAGGGAGGTGTGAGCCCATCTGTCTTCATATATAACGTGATGATAGGTGGTTTGTGTAAAGTGAGGAGGATCAGAGATGCTCAGAACCTATTTGATGAAATGATCAAGAGAAAGCTGGCTCCGAATTTGGTTACCCATAATACGCTGATTGATGGGTACTGTAAGGTAGGAGAAATAGAGATAGCTTTTAGTTTGAAAGAGAGGATGAGGGCGGAAAATGTGGAGCCTAATCGTGTCACATACAATGCTTTGTTAAGTGGTCTTTGTCATTCACAGAGGATGGCGGAAGCGAGTAGGTTGTTGCAAGAGATGGAGGCTAATAGGTTTTTGCCTGATGGGTTTACTAGTATTATATTTGACGATCTTTCAAGTTGTGGAAATTATAATGCTTCAATGGATCTATGTGAGAAAGTTTTCTACAAAGGAGGAACAGTCGATGAATACACTTGTAGTATTTTGTTGAACGGACTATGCAGAGTGGGGAGGATTGGAAAGGCCGAGGAGGTTTTGGCCAAACTATCAGAGAGTGGATTTATTCCAAGTAACATATTATATAACATATTACTGAAAGCATATTGCCAAAAGGGTGACATGGAGAAAGTCATGCGGACATTTGAACAAATGGAAGAACGTGGGTTGAAGGCTAGCTGTATCACTTTCAATACCCTTATTAACAAGTTCTTCGAAACAAGGGAGGTGGAGCAGGCAGAGAGATGGTTAAAGAAGATGGCAGAGAAGGGTGTTTCCGCCAGTGTGGAGACATATAACACTTTAATTAATGGTTACGGCCGTATGTGTCAATTTGACAGGTGTTTCAACATTCTCGAGGAAATGGAAAACATAGGGATAAAGCCAAATCTCTTAAGCTATGGTTATCTAATAAATTGTCTATGCAAAGACGGGAAGCTTCTTGAAGCTGAACTTATCCTTGGGGATATGGCAGGCCGAGGGATTTCTCCAAACGCAGAAATATATAATATGCTGATTGAAGGTAGTTGCTCGATGAGTAAACTGAAAGACGCCTTCAGATTTTTTGATGAAATGGTTCAAAATGGAACAGGTCCAACTCTTGTAACATACAATACGCTCATAAATGGACTCGGAAGAAATGGAAGGGTAGCGGAAGCTGAGGACTTTTTTCTCCAAATGACTAGCAATGGATACAATCCAGACGTAATCACATACAATTCACTGATCTCAGGATATGCTAAGTCGGGAAACACCCAAAAATGTCTGGAGTTATATGTTAATATGAAGAAACTGGGCATAGAACCTACTATTAGGACTTTTCATCCTTTGATCAATGCATGCATCAGGGAAGGGGCGGTGACGGTAGAGAGGATATTTCATGAAATGTTAGAAATGGATCTGGCTCCAGATCGTGTTGTATACAATGCAATGCTTTACAGCTACGCTGAAGAAGGAGATGTTCAAAAGGCAATGTCTCTGCACCAACAGATGGTTGATCACGGGATTCACTCGGACAAGGTAACTTATAACAGTTTGATTCTAGTATATCTGAGAGATAGAAGGGCTTCAGAAGTAAAGCGTCTTGTTGATGATATGAAGGTTAAAGGAGTGGTTCCAAAAGCTGATACATATAACATACTGGTGAAGGGACATTGCGACTTAAAGGATTTCACTGGGGCGTATTTTTGGTATAGGGAAATGTTTAACACAGGTTTCTTCCTAAATGAACGCATCTGCTTTCAACTTATCTCCGGACTTAGAGAGCAGGGAATGCCACAAGAAGCCCAAATCATCTTCTCAGAGTTGAGTTGTAGAGGACAATAA 2451 0.4129 MAMGRRAARLLLPNLQVALRKEPCNSTSVLLSLSFCSGPVSNTLAETHCTQNSELPLENNYPSDTQEQERLQQIGKLRNLLEEGRGDAAKRFIETLILSKIPFSSPFELFAFVSYSSPSLKPVFSNLLLRVCSESKMINEAIELYSLMRKDGMLPSTGSVNRLLETLVNSKQYEKTINLFLDIVESGIRPNSFSYGKVIQAAVMLKDLKRGFEFMNDMEKGGVSPSVFIYNVMIGGLCKVRRIRDAQNLFDEMIKRKLAPNLVTHNTLIDGYCKVGEIEIAFSLKERMRAENVEPNRVTYNALLSGLCHSQRMAEASRLLQEMEANRFLPDGFTSIIFDDLSSCGNYNASMDLCEKVFYKGGTVDEYTCSILLNGLCRVGRIGKAEEVLAKLSESGFIPSNILYNILLKAYCQKGDMEKVMRTFEQMEERGLKASCITFNTLINKFFETREVEQAERWLKKMAEKGVSASVETYNTLINGYGRMCQFDRCFNILEEMENIGIKPNLLSYGYLINCLCKDGKLLEAELILGDMAGRGISPNAEIYNMLIEGSCSMSKLKDAFRFFDEMVQNGTGPTLVTYNTLINGLGRNGRVAEAEDFFLQMTSNGYNPDVITYNSLISGYAKSGNTQKCLELYVNMKKLGIEPTIRTFHPLINACIREGAVTVERIFHEMLEMDLAPDRVVYNAMLYSYAEEGDVQKAMSLHQQMVDHGIHSDKVTYNSLILVYLRDRRASEVKRLVDDMKVKGVVPKADTYNILVKGHCDLKDFTGAYFWYREMFNTGFFLNERICFQLISGLREQGMPQEAQIIFSELSCRGQ 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2669 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 540 574 IPR002885 -
Glsi02g2669 816 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 535 812 - -
Glsi02g2669 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 575 609 IPR002885 -
Glsi02g2669 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 400 434 IPR002885 -
Glsi02g2669 816 Pfam PPR repeat 367 397 IPR002885 -
Glsi02g2669 816 Pfam PPR repeat 126 152 IPR002885 -
Glsi02g2669 816 Pfam PPR repeat 681 711 IPR002885 -
Glsi02g2669 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 749 783 IPR002885 -
Glsi02g2669 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 296 330 IPR002885 -
Glsi02g2669 816 Gene3D Tetratricopeptide repeat domain 451 554 IPR011990 GO:0005515
Glsi02g2669 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Glsi02g2669 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 261 295 IPR002885 -
Glsi02g2669 816 Gene3D Tetratricopeptide repeat domain 103 245 IPR011990 GO:0005515
Glsi02g2669 816 Gene3D Tetratricopeptide repeat domain 555 662 IPR011990 GO:0005515
Glsi02g2669 816 Gene3D Tetratricopeptide repeat domain 663 816 IPR011990 GO:0005515
Glsi02g2669 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 191 225 IPR002885 -
Glsi02g2669 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 610 644 IPR002885 -
Glsi02g2669 816 Gene3D Tetratricopeptide repeat domain 246 336 IPR011990 GO:0005515
Glsi02g2669 816 Gene3D Tetratricopeptide repeat domain 337 450 IPR011990 GO:0005515
Glsi02g2669 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 121 155 IPR002885 -
Glsi02g2669 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 226 260 IPR002885 -
Glsi02g2669 816 NCBIfam pentatricopeptide repeat 367 400 IPR002885 -
Glsi02g2669 816 NCBIfam pentatricopeptide repeat 126 156 IPR002885 -
Glsi02g2669 816 NCBIfam pentatricopeptide repeat 716 748 IPR002885 -
Glsi02g2669 816 NCBIfam pentatricopeptide repeat 681 714 IPR002885 -
Glsi02g2669 816 NCBIfam pentatricopeptide repeat 403 435 IPR002885 -
Glsi02g2669 816 NCBIfam pentatricopeptide repeat 437 470 IPR002885 -
Glsi02g2669 816 NCBIfam pentatricopeptide repeat 612 645 IPR002885 -
Glsi02g2669 816 NCBIfam pentatricopeptide repeat 298 331 IPR002885 -
Glsi02g2669 816 NCBIfam pentatricopeptide repeat 473 505 IPR002885 -
Glsi02g2669 816 NCBIfam pentatricopeptide repeat 229 261 IPR002885 -
Glsi02g2669 816 NCBIfam pentatricopeptide repeat 543 575 IPR002885 -
Glsi02g2669 816 NCBIfam pentatricopeptide repeat 577 611 IPR002885 -
Glsi02g2669 816 NCBIfam pentatricopeptide repeat 263 296 IPR002885 -
Glsi02g2669 816 NCBIfam pentatricopeptide repeat 752 784 IPR002885 -
Glsi02g2669 816 NCBIfam pentatricopeptide repeat 508 541 IPR002885 -
Glsi02g2669 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 470 504 IPR002885 -
Glsi02g2669 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 505 539 IPR002885 -
Glsi02g2669 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 714 748 IPR002885 -
Glsi02g2669 816 SUPERFAMILY HCP-like 345 525 - -
Glsi02g2669 816 Pfam PPR repeat 292 324 IPR002885 -
Glsi02g2669 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 679 713 IPR002885 -
Glsi02g2669 816 Pfam Pentatricopeptide repeat domain 528 587 IPR002885 -
Glsi02g2669 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 469 IPR002885 -
Glsi02g2669 816 Pfam PPR repeat family 609 657 IPR002885 -
Glsi02g2669 816 Pfam PPR repeat family 225 274 IPR002885 -
Glsi02g2669 816 Pfam PPR repeat family 470 518 IPR002885 -
Glsi02g2669 816 Pfam PPR repeat family 714 761 IPR002885 -
Glsi02g2669 816 Pfam PPR repeat family 400 446 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2669 370 815 Glycosyltransferase AT1G05670 29.083 6.62e-68 238