Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2660 ATGAACCCGAAAGACGAAGGTCATCCAAAATCTCCGACAAGGTCTTCTGATTTGGTTACGGAATCGAAGGGTAAATATCCAGCTGATACGTCTTCTTCGGCTCAGTTGGAGCAGGGAACATTTGGGCTCTCTCCTATTCGTTTGTGTTCTGAAGCATTTTCGTCTGACTCTCTATTCGCAGATATCTCATCCAGTCTTTCCATGGCGGACATTAGCCTTTCTGAGCCTCTTCCTCCGTCTTTGTTTTCTTCTCCTTCAATGGAGTTTGAAGCATTTTCAACAATGAACCCGACCTCTCTGGCTTCTTCTCCTCTACCTGTTATGGCAATGCCTATTGACGGGCTAGCTATTTCGTTACCACCATCTATGGGGGAGGACACTGGATTAATGGGAACAAGCCGTGAGTTGGAGAACGTTGATATGCCAAAGCCGCTTGATTGCTTACAGGGGAACCCAGTTCCGCCATTTCTATCGAAAACTTTCGATCTGGTGGATGATCCTTCGCTGGATCCCATCATATCCTGGGGCTCGACTGGTGGTAGTTTCGTGGTATGGGACCCTATGGAGTTCGCAAGACTCATCTTGCCAAGGAATTTCAAACATAACAATTTCTCCAGTTTTGTCCGCCAGCTAAATACTTATGTGGGTATTGCTGTAACGCAGTCTGGAATGGCTGCTGTAATCTGTTTCTGCGGGGCATATGCATTAGAATTAGACTTCCACTGCATGCTATCATCGTTATCATTTCCTTCTGTTTGTGGGTTCCGCAAGATTGACACTGATAAGTGGGAGTTTGCCAATGAATTTTTCAAGCAAGGGAAAAGACATCTACTGAAGAACATTCAAAGGCGCAAGTCACTTCAATCCCAGCATGTTGACTGCTATATTGGGCCGTCTACTGAAGCAGGGAAGTCTGGACTTGAAGTTGAGATAGGAAGACTGAGGAAGGAGAGAAGTATGTTAATGCAAGAAGTGGTTGATTTGCAGCAACAACAGCGAAGGACTGTTCACCATCTGGGAGAGGTGAACCAGAGACTCCAGTCTGCAGAGCAGAGACAGAAGCAAATGGTTTCTTTCTTGGCAAAGTTATTTCAAAACCCAGCCTTTTTGGCCCGCCTTAAGCAAAAGAAGGAACAGACAGAAATATATACTCCAAGAGTAAGAAGAAAGTTTGTCAAGCAGCACCAACATGAAACAGGAACATCAGATTCTTTGAAGGAAGGGCAGATTGTAAGATACCAACCCGGTAGGAGAAATATAACCACCTCTTCTGAAACATCGGTACTAAATCCTGTTTCTATTGAACAGTCTCCTGACTACCTTTCACAAGGTTTGGCAAGAGATTTGAGTTCAAGGGAAGAAAATCAGACTTCTAAAATTCAGAATGTTGTATTAGATGAATTGGCTGCGGTGCAAGAGATTATGTCAACTGCGGAGATCGTAGGAGAAGGATCATCAAGCCTAGGACTTGAAGATCCCCTTTTCAAAGAGAAAAAGGTCATGAGCCCAGATCAAGAAGTCAACCCAGAGTATTTTATATCTTTCCCAGAGAATTTGACCGAGGAGAAAAGCTTTCCAACGTTTTACTCTCCCGAAAATGAAAGCATTATTAAACAAGAAGATATATGGAACCCAGGCTTTAATTTTAGCGGTGCTGCTTCTAGCTCTGGGAATGAGCTGTGGGGCAATCCAATCAATTATGAAGTGCCAGAATTTGGAGTGACAGGTGATATGTCAGACATATGGGATATAAGCTATATGCAAGCAACAGGAAATTTGGGCATTGATAAGTGGCCAACTGATGAATCCCCTCTGAATGAAACCGAAAGTCAAGCTGATCACCCAAAAGATGGCGCATCTAAGAATGTCAATCCATAG 1878 0.4372 MNPKDEGHPKSPTRSSDLVTESKGKYPADTSSSAQLEQGTFGLSPIRLCSEAFSSDSLFADISSSLSMADISLSEPLPPSLFSSPSMEFEAFSTMNPTSLASSPLPVMAMPIDGLAISLPPSMGEDTGLMGTSRELENVDMPKPLDCLQGNPVPPFLSKTFDLVDDPSLDPIISWGSTGGSFVVWDPMEFARLILPRNFKHNNFSSFVRQLNTYVGIAVTQSGMAAVICFCGAYALELDFHCMLSSLSFPSVCGFRKIDTDKWEFANEFFKQGKRHLLKNIQRRKSLQSQHVDCYIGPSTEAGKSGLEVEIGRLRKERSMLMQEVVDLQQQQRRTVHHLGEVNQRLQSAEQRQKQMVSFLAKLFQNPAFLARLKQKKEQTEIYTPRVRRKFVKQHQHETGTSDSLKEGQIVRYQPGRRNITTSSETSVLNPVSIEQSPDYLSQGLARDLSSREENQTSKIQNVVLDELAAVQEIMSTAEIVGEGSSSLGLEDPLFKEKKVMSPDQEVNPEYFISFPENLTEEKSFPTFYSPENESIIKQEDIWNPGFNFSGAASSSGNELWGNPINYEVPEFGVTGDMSDIWDISYMQATGNLGIDKWPTDESPLNETESQADHPKDGASKNVNP 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2660 625 MobiDBLite consensus disorder prediction 1 36 - -
Glsi02g2660 625 SUPERFAMILY "Winged helix" DNA-binding domain 151 284 IPR036390 -
Glsi02g2660 625 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 142 423 IPR027725 -
Glsi02g2660 625 Gene3D - 149 285 IPR036388 -
Glsi02g2660 625 Coils Coil 311 331 - -
Glsi02g2660 625 PRINTS Heat shock factor (HSF) domain signature 194 206 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi02g2660 625 PRINTS Heat shock factor (HSF) domain signature 207 219 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi02g2660 625 PRINTS Heat shock factor (HSF) domain signature 156 179 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi02g2660 625 Pfam HSF-type DNA-binding 156 284 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi02g2660 625 MobiDBLite consensus disorder prediction 595 625 - -
Glsi02g2660 625 SMART hsfneu3 152 284 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi02g2660 625 MobiDBLite consensus disorder prediction 13 36 - -
Glsi02g2660 625 FunFam Heat stress transcription factor B-4 148 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2660 Glsi-ChrGlsi02 76216266 76218895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2660 95 607 HSF AT5G03720 39.811 6.38e-99 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Glsi02g2660 HSF_DNA-bind 5e-27 CL0123