Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2658 ATGGTGATGGACATGGATAGCTCAAGTAGATCGTTCGATAGATCGAGAGAGCCAGGTATTAAGAAACCCCGATTGACAGACGAGCTCGAGCGCGGCACAGGTTCCAGTGTCCGACCATTTCCTCAGCGAAAAGTGGCTTCTGGGGTTAATACGCTGGCCTCAGCAAGGTTTAGGACAAACGACAGAGATTCGGAAGGCAGTGATTCCGGTCGCGGTAGTGGATACCAACTCCAGCAACCGCTGCACCAAGAGCTTGTAACTCAGTATAAAACCGCGCTTTCTGAGCTGACTTTCAATTCTAAACCGATAATTACCAACTTGACTATAATTGCAGGCGAGAACCTTTATGCTGCGAAGGCAATTGCTGCCACTGTTTGTGCCAATATTATAGAGGTTCCTAGTGAACAAAAGCTGCCATCTCTTTATCTTTTAGACAGTATTGTTAAGAATATCGGGCGGGACTATATAAAATACTTTGCTGCCAGACTACCTGAGGTATTCTGCAAGGCATACAGACAGGTTGATCCTCCTGTCCATCAGAGCATGAGGCATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCTTCAGACCCTTCAGATGATTGAGAAAGAACTTGGCTTCACTCCTGCTGTCAATGGTTCATCTTCCGTATCTTCTGCACTCAGGGGTGATTCTCAGTCACAACGTCCACAGCATAGTATTCATGTGAATCCCAAGTATTTAGAGAGGCAGCGACTTCAGCAGTCCAGTAGGACTAAAGCAACAGCTAATGATATGGCTGGAGGTATTGCAAACTCAACTGATGAAGCAGAAAGGCCAGATATAGCATTGGGTGCTGCACAAGTGGATTCTAGTGTTAACATGCATAACATTCAGCGCTCTCATAGAGATGCATATTATGATTCTGTTCCTGAAAAGGGCATTGGTGCATCATATGGAGGCAATGAATATGGTTCTGATCTTTCAAGGATTTCAGGCTTGGGTATTGGAATAACTGGTGGCAGGGTCTCTGAGTTAGCACGTGACAAAGCTAGGTACAGACCAGGCAGCAGTGCTGCAGAGGTGAGGTCTGGCCAAAGAAATGGTTTCAGTCTTCAGCATGGTTTTCCGAATCATGAAGTACCAAAGGCCATGAGTTTGGATTCACATAATCAGCCAACGCAAAGCTTAACTAGCATAAGGAGTGGTGTGATGTCAAGTAGCTGGAAAAATTCTGAGGAAGAGGAGTACACGTGGGATGAGATGAACACTGGACTGACCGGTCATGGTACATCCAATGTCTCTAACAACTTGAGCAAAGACCAGTGGACTGCTGTTGATGATGATTTGGCAGTTGAAGATCACCTTCAAATCACATGCCATTTTGGGGGAAAGGTTGATAGAGAAGTATCCACTGAAAAGAAAACGCTACCAGCTTTTGGTAATCGGCCATCATTATCATGGCAATTGCAGGAGCAGCCCTCATTGGATGAGCTGAATAGTAAGCCAGGTTCTTCAGAAGGCTTTGCATCCACTCTTGGTGGGTTATCAACCAATAAAAATACTTCTGCTGTCAGGATGGGAAATCGGCCTTTTTTGCCAAATTCAACTATAGGATCAGCAGGAATGGTGCGACAACAGCAATTTCAGTCTGTGGGAGTGGAATCCCCTTCTGGGCAGTCACCTTTGCGACAACGGTCTCCAACACCACCAGTTACTGTGCACCATCCTCCACATCAATTGCGAATGTTGGCTGAGCAAGACCATCCACAGACTCTTAAAACGTCTCAATTTTCAGGAGCTCAACAGAGCCAAGATGTTCGAGATTCTTCTCCTGTTCTTCCACATATTGTCAAGGTTGGTAACTCGCGAAGATCACAGCAAAAGGACTTGCAACGTCAGTTGTCTTCAGTGACTACTTTTCAGCCGAGGCATCATAATGGAGCTTTAAAGAAACAGCAACTTGGCTCTTCTCGGACTGAAGTCTCTGATAAGACAGAGAGTCCACCCCAGTCCAAATTTTCTGTGGCTGGAGAAACTTCAGAACAGTCAACCACAAATAGTTTGTTAGCTGCAGTTATGAAGAGTGGCATCTTCACCAACAATACAATTACCAGTAGCCGGCCTACTACAAGTGTCTTGGAAACAAGGGACCTGCAAACGAAATTAGGGGTTCAGCCTAGCCGGGCTAGTGTGTCTTCACCCACCACATCAATTTCTTCGGGGTCAAGGGTTGCATCACCATCTCCATTAGGTCCATCTTCCAATGATGACTCATCTACTCTACCAAATGTATCTCAAGGAAATGTTGGAACACCAGCAACGGTTCCTGCTTTACCACCAGCTTCCTCTACTATGAGTAGTGCCTCAGCTAAGACCTCAAATGCCACTAATAATAACCCTAATCCAGTTTCAAACCTTTTAAACTCATTAGTTGCAAAGGGTTTGATTTCTGCAAAAACAGAGTCATCAACTAACGTGCCAGCTGAGACGCTGATCCGATTGGAAGACCAAAGCCAAAGCATTATCACCAATAGCTCTTTGCCAGTTGCTTCAGTTTCTGGTTCTGCAGCTGTCCCTGTATCATCTACCACAGATGATCAACCTGCTAAAAGCTCTGAGCCCCTATCTCAATCCCCCACAGAAATAAGTAATCTCATTGGCTTTGAGTTTAAGCCCAATGTAATCCGAGAATTGCATTTACCTGTGATCAGAGAACTATTGGACAATGTTCCACATCATTGCAGCATTTGTGGCCTTAGGCTTAAACATCAAGAACAGGTTAATAGACATTTGGAGTGGCATGCTACTAGGGAAAGAGAACAAAATGGTCTAATTAAGGCATCGAGAAGATGGTACTTAAAGTCAAGTGACTGGATTGTTGGCAAGCGTAAATTTTCATCTGAGCATGAGTATATTGATTCTCTAGATGCATATGAAAAGAAACCTGACAAAAGTGAACTGGGTGCGATGGTTCCAGCAGATGAATACCAGTGCTTGTGTGTGTTGTGTGGCAAGCTATTTGAAGATTTTTACTGTCAAGAAAGGGATGAGTGGATGTTCAAAGAGGCTGTTTACATATCTATCTCAGATAGTGATGGCGAGATGCTTATTAATGTCAGTACTGCTAGGGGTCCCATTGTTCATCCAAGATGCTTATCAGAGATCTCCATATCCTGTGCCACTACACTGGTGAGGCATATTATCTGA 3189 0.445 MVMDMDSSSRSFDRSREPGIKKPRLTDELERGTGSSVRPFPQRKVASGVNTLASARFRTNDRDSEGSDSGRGSGYQLQQPLHQELVTQYKTALSELTFNSKPIITNLTIIAGENLYAAKAIAATVCANIIEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPPVHQSMRHLFGTWKGVFPLQTLQMIEKELGFTPAVNGSSSVSSALRGDSQSQRPQHSIHVNPKYLERQRLQQSSRTKATANDMAGGIANSTDEAERPDIALGAAQVDSSVNMHNIQRSHRDAYYDSVPEKGIGASYGGNEYGSDLSRISGLGIGITGGRVSELARDKARYRPGSSAAEVRSGQRNGFSLQHGFPNHEVPKAMSLDSHNQPTQSLTSIRSGVMSSSWKNSEEEEYTWDEMNTGLTGHGTSNVSNNLSKDQWTAVDDDLAVEDHLQITCHFGGKVDREVSTEKKTLPAFGNRPSLSWQLQEQPSLDELNSKPGSSEGFASTLGGLSTNKNTSAVRMGNRPFLPNSTIGSAGMVRQQQFQSVGVESPSGQSPLRQRSPTPPVTVHHPPHQLRMLAEQDHPQTLKTSQFSGAQQSQDVRDSSPVLPHIVKVGNSRRSQQKDLQRQLSSVTTFQPRHHNGALKKQQLGSSRTEVSDKTESPPQSKFSVAGETSEQSTTNSLLAAVMKSGIFTNNTITSSRPTTSVLETRDLQTKLGVQPSRASVSSPTTSISSGSRVASPSPLGPSSNDDSSTLPNVSQGNVGTPATVPALPPASSTMSSASAKTSNATNNNPNPVSNLLNSLVAKGLISAKTESSTNVPAETLIRLEDQSQSIITNSSLPVASVSGSAAVPVSSTTDDQPAKSSEPLSQSPTEISNLIGFEFKPNVIRELHLPVIRELLDNVPHHCSICGLRLKHQEQVNRHLEWHATREREQNGLIKASRRWYLKSSDWIVGKRKFSSEHEYIDSLDAYEKKPDKSELGAMVPADEYQCLCVLCGKLFEDFYCQERDEWMFKEAVYISISDSDGEMLINVSTARGPIVHPRCLSEISISCATTLVRHII 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2658 1062 Pfam CID domain 90 199 IPR006569 -
Glsi02g2658 1062 MobiDBLite consensus disorder prediction 852 872 - -
Glsi02g2658 1062 MobiDBLite consensus disorder prediction 614 676 - -
Glsi02g2658 1062 MobiDBLite consensus disorder prediction 584 603 - -
Glsi02g2658 1062 MobiDBLite consensus disorder prediction 379 400 - -
Glsi02g2658 1062 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 41 1052 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Glsi02g2658 1062 FunFam polyadenylation and cleavage factor homolog 4 78 206 - -
Glsi02g2658 1062 MobiDBLite consensus disorder prediction 486 561 - -
Glsi02g2658 1062 MobiDBLite consensus disorder prediction 216 234 - -
Glsi02g2658 1062 MobiDBLite consensus disorder prediction 1 76 - -
Glsi02g2658 1062 CDD CID_Pcf11 86 198 IPR047415 -
Glsi02g2658 1062 MobiDBLite consensus disorder prediction 486 569 - -
Glsi02g2658 1062 MobiDBLite consensus disorder prediction 242 262 - -
Glsi02g2658 1062 MobiDBLite consensus disorder prediction 714 796 - -
Glsi02g2658 1062 ProSitePatterns Zinc finger C2H2 type domain signature. 908 928 IPR013087 -
Glsi02g2658 1062 ProSiteProfiles CID domain profile. 81 209 IPR006569 -
Glsi02g2658 1062 SMART 558neu5 84 206 IPR006569 -
Glsi02g2658 1062 SUPERFAMILY ENTH/VHS domain 83 210 IPR008942 -
Glsi02g2658 1062 MobiDBLite consensus disorder prediction 9 31 - -
Glsi02g2658 1062 MobiDBLite consensus disorder prediction 216 272 - -
Glsi02g2658 1062 Gene3D - 76 206 IPR008942 -
Glsi02g2658 1062 MobiDBLite consensus disorder prediction 584 676 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2658 Glsi-ChrGlsi02 76198652 76205963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2658 56 419 C2H2 Transcription Factor Family AT4G04885 36.788 7.78e-56 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi02g2658 CID 5.8e-13 CL0020
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2658 02 76198652 76205963 Glsi02g2658 02 76198652 76205963 ECH