Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2655 ATGGAAATGGAGGATAACCATAATCATCATCACCAACAGCAGTATGGCATGGCCGATCTCAGGCAGCTCATGAACGGACCAAGGTCGACGCATTTCCCTTCAATACCAACCCAACCCACGGCGGAGCTCTTCCAGGGTCACCGGAATCTGACACCGACCCACCACCAACACTACGAGATGATGATGTTTGGTCGCCATGTAGCTGATATAATGCCTCGTGCCCTCCACGACTTTGCCTCCGATTCTGCTACCACTGGCACTGCTGCTCCGCCCACTAATACTACCATTACTGTAGCCACTCCAGCTACCACCGCCAGCGCTTCCACTCCTTCGCTTAGTGGGTTAGAGGCTGAGACTGCAGGCTGCCTCGGTGGAGATGCCTCCACTGGACGATGGCCCAGACAAGAAACACTTACTCTTCTGGAGATCAGATCTCGTCTAGACCCTAAATTCAAAGAGGCCAATCAGAAGGGACCCTTGTGGGATGAAGTCTCCAGGATCATGTCTGAAGAACATGGATACCAAAGGAGTGGGAAAAAATGCAGGGAAAAGTTTGAGAACTTGTACAAATATTACAAGAAGACAAAGGAAGGTAAGGCGGGGAGACAGGATGGAAAGCACTACAGGTTCTTTCGACAACTTGAAGCCTTATATGGAGGAAATAGTAACTCGACGTCAGTACCAGAAACCAGTATTCGTTTTCAAGCAAGCAGCCACACCCCCTCCCAAACAAATCAAGACATGTTTCAGTCTCACAAGCATTGCGATAGCCTCAGCCTCACTAACTCCACTGACTTTGACACATCATCATCGGATGGCAATAATCTCAGCACTGGAGGACTCATGGAAAATGGATCCATGGAGAAGGAGAGAAAGAGAAAGGGCGGAAAGAGCTGGAAGGCAAAAATAAAAGACTTCATGGACTCACAGATGAGGAAGCTGATGGAAAAGCAAGAAGCATGGTTGGATAGACTCGTGAAGACACTTGAACAGAAGGAAAAGGAGAGGATGCTAAGAGAGGAAGAATGGAGGAGACAGGAGGCAGCCAGGTTAGAAAGGGAGCACAAATTTTGGGCTAAGGAAAGAGCATGGATTGAAGCCAGGGATGCTGCTCTAATGGACGCCTTGCAAAAATTGACAGGAAAAGAAATTAAGGTTCAATCTCCTGAGGGCCTAATGGCTACTGAAGTTCAAAACCGTACGGGAAACCAGAATGAAGATGGAAGTGAAATATTGAATAGCAGTGCTAGAGGTGCTGAAAGCTGGCCAAAGTCTGAGATTACAAGGCTTCTGCAGTTGAGAGCTGAGATGGAGTCCGGGTTTCAGCAATGCGGGTGTTCAGAAGAGGTTATGTGGGAGGAAGTAGCAACCAAAATGGCTTGTTTTGGCTACGAAAGGACTGCTTTGATGTGCAAAGACAAATGGGAAAGTATCGGCAATTATCCAAGTAATGCGAAGCGAAAGGAAAAGTCAAGAAGCTGTTTTTACTTCGAGAACAATGACCACTCATCCTTGTATAATCAAGGAAGTGCCTATTGTGATATCAACGAACAAGGGCAGGAGACCGAGAGGCTACAAACAAATGATGGTTCTTCACCTTCAAATTCCAATGTTGGAAATGCAGTTACGGCTGACAGCTGCTTTCCCTTCTTTATTAATGAGGGAGAAAATTTGTGGGAAAACTACACCTTAAAGCTCAATAAAGGAAACCAAAACCAGTGA 1722 0.4663 MEMEDNHNHHHQQQYGMADLRQLMNGPRSTHFPSIPTQPTAELFQGHRNLTPTHHQHYEMMMFGRHVADIMPRALHDFASDSATTGTAAPPTNTTITVATPATTASASTPSLSGLEAETAGCLGGDASTGRWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGGNSNSTSVPETSIRFQASSHTPSQTNQDMFQSHKHCDSLSLTNSTDFDTSSSDGNNLSTGGLMENGSMEKERKRKGGKSWKAKIKDFMDSQMRKLMEKQEAWLDRLVKTLEQKEKERMLREEEWRRQEAARLEREHKFWAKERAWIEARDAALMDALQKLTGKEIKVQSPEGLMATEVQNRTGNQNEDGSEILNSSARGAESWPKSEITRLLQLRAEMESGFQQCGCSEEVMWEEVATKMACFGYERTALMCKDKWESIGNYPSNAKRKEKSRSCFYFENNDHSSLYNQGSAYCDINEQGQETERLQTNDGSSPSNSNVGNAVTADSCFPFFINEGENLWENYTLKLNKGNQNQ 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2655 573 MobiDBLite consensus disorder prediction 234 282 - -
Glsi02g2655 573 SMART sant 128 191 IPR001005 -
Glsi02g2655 573 SMART sant 418 481 IPR001005 -
Glsi02g2655 573 FunFam trihelix transcription factor PTL-like 132 194 - -
Glsi02g2655 573 ProSiteProfiles Myb-like domain profile. 124 189 IPR001005 -
Glsi02g2655 573 ProSiteProfiles Myb-like domain profile. 414 479 IPR001005 -
Glsi02g2655 573 CDD GT1 422 481 - -
Glsi02g2655 573 FunFam Trihelix transcription factor GT-2 422 484 - -
Glsi02g2655 573 MobiDBLite consensus disorder prediction 285 299 - -
Glsi02g2655 573 Pfam Myb/SANT-like DNA-binding domain 421 501 IPR044822 -
Glsi02g2655 573 Pfam Myb/SANT-like DNA-binding domain 131 217 IPR044822 -
Glsi02g2655 573 MobiDBLite consensus disorder prediction 401 420 - -
Glsi02g2655 573 Coils Coil 315 342 - -
Glsi02g2655 573 Gene3D - 132 194 - -
Glsi02g2655 573 Gene3D - 422 481 - -
Glsi02g2655 573 CDD GT1 131 196 - -
Glsi02g2655 573 PANTHER FI21293P1 95 533 - -
Glsi02g2655 573 MobiDBLite consensus disorder prediction 234 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2655 Glsi-ChrGlsi02 76167366 76169880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2655 14 568 Trihelix Transcription Factor Family AT5G03680 45.351 3.14e-146 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Glsi02g2655 Myb_DNA-bind_4 2e-19 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2655 02 76167366 76169880 Glsi02g2655 02 76167366 76169880 ECH