Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2654 ATGGACGAAACCCGATTAAGTTTCAAACACCGTGATGATGAGGATGATGGTGAAAGAAAAGAAAAAGAAGGTGGTAAGTTGCTTGACAATTTTACAGCGGGGAAAGAGTTAGCTGGTGCGTACGCGGTAGCGGCACAATCCTTATTGTCCCTATTCTCCAAGGTCCAGAGATGTGAGACAGATCAATTCCAACTCATTAATTTCAAACCCAAGGTTAACATCATAACATTGATATGTGATATATGGCATACTCTAAAGTCTAAACCATTCATTAATTTGGCCGCAGGGTTTGAAGATGAAAAGATGATGCTTAATTGCAATGGTCTCACAGTACGGACGAGAACTTGTTGCTCCTGCGATCAAATCCAAGCCCCCATAAATGGCTTCCCTCAACTGCCAACTGCCAACGAATCTCACTCTCAAGCAAATTACAAAACCATGCGTTCCAATACTCAATCTAGCAGTGGTTCTGGAGCTAGCAGCAGCCAAGTCTCAGGTGCACCAACTGGGCGTCACCCAGTGTACCGAGGAGTGAGGCGTCGGAGTAGTGGGAAATGGGTGTCTGAAATTCGAGAGCCCAGGAAGCCTAACAGGATTTGGTTAGGCACATTCCCTACACCAGAAATGGCTGCTGTTGCCTATGATGTTGCTGCCCTTGCCCTTAAAGGCAAGGATGCTGAGTTAAACTTCCCTGACTCCGCTTCTTCATTGCCCGTTCCTGCCTCTTCCTCTGCCCGTGATATTCAGGTGGCTGCAGCTAGTGCTGCTGCTGCTGCTGGGGCTGCCAAGGATGCTTTATCCGGGATTGGGTCAACCCAACCTGGGAATGCTTTGATGCCACAAGACAAAGAAGGGGTCCCTGAGTTTGTGGATGAGGATTTGATTTTTGATTTACCCAATGTTCTGGTCAATATGGCCGAAGGAATGCTGCTCAGCCCTCCTCCTTTGGACTTTGCTGGGGAAGATGCTGCCGCACAATACACCGCAGAAGATCAAAACCTTTGGAAATTTCCCTAA 1017 0.4749 MDETRLSFKHRDDEDDGERKEKEGGKLLDNFTAGKELAGAYAVAAQSLLSLFSKVQRCETDQFQLINFKPKVNIITLICDIWHTLKSKPFINLAAGFEDEKMMLNCNGLTVRTRTCCSCDQIQAPINGFPQLPTANESHSQANYKTMRSNTQSSSGSGASSSQVSGAPTGRHPVYRGVRRRSSGKWVSEIREPRKPNRIWLGTFPTPEMAAVAYDVAALALKGKDAELNFPDSASSLPVPASSSARDIQVAAASAAAAAGAAKDALSGIGSTQPGNALMPQDKEGVPEFVDEDLIFDLPNVLVNMAEGMLLSPPPLDFAGEDAAAQYTAEDQNLWKFP 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2654 338 ProSiteProfiles AP2/ERF domain profile. 174 231 IPR001471 GO:0003700|GO:0006355
Glsi02g2654 338 CDD AP2 175 233 IPR001471 GO:0003700|GO:0006355
Glsi02g2654 338 FunFam Ethylene-responsive transcription factor 2 173 232 - -
Glsi02g2654 338 SMART rav1_2 174 237 IPR001471 GO:0003700|GO:0006355
Glsi02g2654 338 Pfam AP2 domain 173 223 IPR001471 GO:0003700|GO:0006355
Glsi02g2654 338 PRINTS Ethylene responsive element binding protein signature 213 233 IPR001471 GO:0003700|GO:0006355
Glsi02g2654 338 PRINTS Ethylene responsive element binding protein signature 175 186 IPR001471 GO:0003700|GO:0006355
Glsi02g2654 338 MobiDBLite consensus disorder prediction 130 189 - -
Glsi02g2654 338 MobiDBLite consensus disorder prediction 130 168 - -
Glsi02g2654 338 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 135 336 IPR045277 GO:0003700
Glsi02g2654 338 MobiDBLite consensus disorder prediction 1 23 - -
Glsi02g2654 338 SUPERFAMILY DNA-binding domain 174 233 IPR016177 GO:0003677
Glsi02g2654 338 Gene3D AP2/ERF domain 174 232 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2654 Glsi-ChrGlsi02 76147247 76150699 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2654 170 338 AP2-EREBP Transcription Factor Family AT2G36450 64.000 4.53e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi02g2654 AP2 3.7e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2654 02 76147247 76150699 Glsi11g1082 11 6824715 6825853 CCT
Glsi02g2654 02 76147247 76150699 Glsi02g2654 02 76147247 76150699 ECH