LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi02g2614	ATGATTTGTGAGCAGAGGTGGCTTTGGGCCCAACAAGTTGCTAGCCCTGTGGGCTTAGAGACGGCCCAATCTGAAATTGGGCTTGCTGGAATCAGCTTCGAATACATTGGTGCGCAGGCTATGCATGTGGATCGTTCGAGCAGAAAACAACACGTACATGAAGATAACGCTAGGAAAAGCAAAGGATTGAGATCGACCTTATCTCAAACACGGAAACAAGCTCTTTGTTCCACTGGGTTAATAGCATTTGAGCTGAACTTGGCTTTCCAGGGCAAACTAAAGAGGAGAAGAAAAATGGTGGTGCCGGAGGGCGAGATGAATTCCCAAGGTGAGGTGGAATCGCCGTTACAATCTGAGCAAACACCCAAAAACCATCCATTCTCATCTCTTGGAAGGCAATCATCAATATACTCCCTCACCCTTGACGAATTCCAGCACACGCTATGCGAGGGAGGCAAGAACTTTGGGTCCATGAACATGGACGAGTTCCTCAGCAGTATCTGGAACGCCGAAGAGAATCAAGCCATTAACTCCAACCAAAACAGCAGCAACAACAACAACAACTCCCATTTCACTCAAAGCGAAGCCCCCTCAGAGAAAGGGATAAGAAAGCAGCCAAGCCTGCCTCGTCAGGGCTCTCTAACCATTCCCGCACCGCTCTTTAGGAAAACTGTGGACGAAGTTTGGTCCGAGATACACAAAGGACAGCAAGTGCAGCAGCAGCAGCAGAATCAGTGTGGCAGTAGCAATGACGGTGCCAACAATGGGGATAATGTTCAGAATCCCGAGTCTGCCCGTCGCCAGCCCACTTTTGGGGAGATGACTTTGGAGGATTTCTTGATCAAAGCGGGGGTAGTTCGGGAATCATGTGCCATGCCCGCGTTAGCCTCTCAGAAGCAGTACGGGCAGTACCCAAATAACAAGTCTGCAACAAGACCCACTTTTGTTGGTAGGCCTGTTATTGGGATTGCGCCATACCAAGCAGTGGCTCAGGGAGGTGGGGCTATAGGAGAACCTTCTGGGTATGCCGGAAATGGCAAGAGGGATACTGGGTATCCTCCCCCTCCACCGCCTCCAGGGGTTTGCTACGGAGGTGGAGGGTATGGGGCGGCAACGACAATGGGAATGGGTGGGCCGGTGAGCCCGGTTTCATCGGATGGGCTAGGCACGAGTGAGATGGAGATGGGAGTGTTGAGAGGAAGAAAGAGGATCATAGATGGTCCGGTGGAAAAGGTGGTGGAGAGAAGGCAGAGGAGGATGATAAAGAACCGAGAGTCAGCTGCAAGATCTAGAGCCAGAAAACAGGCATACACGGTTGAATTGGAAGCAGAATTGAACCAATTAAGAGAAGAGAACGCCCAACTTAAACATGCGCTGGCCGAGCTTGAGAGAAGAAGAAAGCAACAGTGTTTCGAGGAGTTGAACATCAGGGGTCAAACCAAAGCTCAAAAGGCAAAAGACAAGTTCAGAACTTTGAGAAGGAATCTAAGTTGTTCTTTGTGA	1503	0.501	MICEQRWLWAQQVASPVGLETAQSEIGLAGISFEYIGAQAMHVDRSSRKQHVHEDNARKSKGLRSTLSQTRKQALCSTGLIAFELNLAFQGKLKRRRKMVVPEGEMNSQGEVESPLQSEQTPKNHPFSSLGRQSSIYSLTLDEFQHTLCEGGKNFGSMNMDEFLSSIWNAEENQAINSNQNSSNNNNNSHFTQSEAPSEKGIRKQPSLPRQGSLTIPAPLFRKTVDEVWSEIHKGQQVQQQQQNQCGSSNDGANNGDNVQNPESARRQPTFGEMTLEDFLIKAGVVRESCAMPALASQKQYGQYPNNKSATRPTFVGRPVIGIAPYQAVAQGGGAIGEPSGYAGNGKRDTGYPPPPPPPGVCYGGGGYGAATTMGMGGPVSPVSSDGLGTSEMEMGVLRGRKRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLREENAQLKHALAELERRRKQQCFEELNIRGQTKAQKAKDKFRTLRRNLSCSL	500

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi02g2614	500	MobiDBLite	consensus disorder prediction	339	358	-	-
	Glsi02g2614	500	MobiDBLite	consensus disorder prediction	102	131	-	-
	Glsi02g2614	500	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	418	433	IPR004827	GO:0003700\|GO:0006355
	Glsi02g2614	500	Coils	Coil	431	468	-	-
	Glsi02g2614	500	MobiDBLite	consensus disorder prediction	177	200	-	-
	Glsi02g2614	500	MobiDBLite	consensus disorder prediction	110	131	-	-
	Glsi02g2614	500	PANTHER	CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED	131	479	IPR043452	GO:0003700\|GO:0045893
	Glsi02g2614	500	MobiDBLite	consensus disorder prediction	232	270	-	-
	Glsi02g2614	500	Gene3D	-	413	467	-	-
	Glsi02g2614	500	CDD	bZIP_plant_BZIP46	415	469	-	-
	Glsi02g2614	500	MobiDBLite	consensus disorder prediction	44	66	-	-
	Glsi02g2614	500	Pfam	bZIP transcription factor	415	466	IPR004827	GO:0003700\|GO:0006355
	Glsi02g2614	500	MobiDBLite	consensus disorder prediction	44	61	-	-
	Glsi02g2614	500	SUPERFAMILY	Leucine zipper domain	415	465	IPR046347	GO:0003700\|GO:0006355
	Glsi02g2614	500	FunFam	protein ABSCISIC ACID-INSENSITIVE 5 isoform X1	413	469	-	-
	Glsi02g2614	500	SMART	brlzneu	411	475	IPR004827	GO:0003700\|GO:0006355
	Glsi02g2614	500	MobiDBLite	consensus disorder prediction	233	268	-	-
	Glsi02g2614	500	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	413	465	IPR004827	GO:0003700\|GO:0006355
	Glsi02g2614	500	MobiDBLite	consensus disorder prediction	177	219	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi02g2614	Glsi-ChrGlsi02	75844768	75848776	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi02g2614	99	470	bZIP Transcription Factor Family	AT2G36270	52.304	4.77e-115	345

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Glsi02g2614		bZIP_1	3.5e-11	CL0018

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Glsi02g2614	02	75844768	75848776	Glsi11g1107	11	7004003	7005996	CCT
	Glsi02g2614	02	75844768	75848776	Glsi02g2614	02	75844768	75848776	ECH