Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2605 ATGGCCTTGAAGAGGTTCCTCAAACCCATTGCAAAACCATCACTCTCGTCGTCCTCACCACCCATTTCTCCGATCCCTAACCCTCCTCTCCCAGCCCCACCAGATACGTCTCTCGCCCCACTTCCTACTCTTACTGTTTCTCCCAACTCCCACTATCAGCGCCTCCTTGAATTTGTGAAAACCCATCTCGCCCCTCCTTTAACACCCGATAGCCTTCTCCACTTCCTCAAATCGAAGCTCCATCACCATCCCGGCTTCACCCACTACGACTTTCACATCTTCAATTGGGCCTCCACTATTGACTCCTACCGCCACAACCACTCTACTTTCGAATGGATGGCTGGTACTCTCGCTATTACCAACCGTTTGGTCGACCTCCGGGCACTTCTTCAATTCATGACTTCCAGTCCTTGCCCCTGCTCCGACGGTATTTTCTCTTGCTCTCGAACTGAACCCATATTCCAGTTTGCGATTAACGCTTTTTGCAAAGCTCGGAAATTGGATGATGCTGTGTTCGCTTTTGAATGTATGCGGAGACTGATTGATGGGAGGCCTAATGTGGTTATATACAATTCTTTGATTCATGGGTTTGTGAAATGCGGAAGGCACGATAAAGCGCTAGAATTTTATGATAAAATGATTAGAGATAAGGTCAGGCCTGATGTGTTTACTTTTAATATTTTGATCAATAGTTATTGTCGAAATTCACAGTTTGGATTGGCTTTGGAATTGTTTAAGGAGATGAGGGAAAAAGGGTGCAATCCTAATGTAGTCACTTTTAATACTTTGATTAAGGGACTCTTTAGGGAGCGGAAGATTGAAGAAGGGATTGAGATGGCCTACGAGATGATTGAATTGGGGTGTCAGCTCTCAGTTGTAACTTGTGAGATTTTGGTTGATGGACTTCGTAAGGAAGGTCAGGTTTTGCAGGCATGTGAGATATTAGCAGACTTGTCCAGCAAGAGAGTTTTGCCCAACGGGTACGATTATTTTGTTTTGGTGGAAACTCTATGTGGGAAAGGGAATGCTATTAGAGCATTGGAGCTCGTTTATGAGTTATGGAACCAAGGAAATGTCCCGAGCTTGATTGCTTGTACTATATTGATTGACGGATTAAGAAGTTTGGGGAAGACTGAAGAATCATTTAGATTATTCGAAAAGATGCTTAAAGAGAATATAGTTCCGGATATTGTGACTTTTAATTGTGTTCTTCAAGATCTTTGCAATGTGCAAAGAACAACAGAAGCAAATAAATTGAGATTGCTGGCTTCAAGCAAGGATCTGAAACCAGATGGCACGACCTATAGAATATTGGTTTCAGGGTATACATGGGAGGGCAGTCAAAAGGAGGGAGAGTTACTGGTAAATGAAATGTTGGATAGGGGATTTATACCTGATCTTGCTACATATAATAAATTGATGAATGGTTTCTCTAATTGCCAACGTTCTACTCTCCATAAAGTTAACAAAATTGATTAG 1479 0.4253 MALKRFLKPIAKPSLSSSSPPISPIPNPPLPAPPDTSLAPLPTLTVSPNSHYQRLLEFVKTHLAPPLTPDSLLHFLKSKLHHHPGFTHYDFHIFNWASTIDSYRHNHSTFEWMAGTLAITNRLVDLRALLQFMTSSPCPCSDGIFSCSRTEPIFQFAINAFCKARKLDDAVFAFECMRRLIDGRPNVVIYNSLIHGFVKCGRHDKALEFYDKMIRDKVRPDVFTFNILINSYCRNSQFGLALELFKEMREKGCNPNVVTFNTLIKGLFRERKIEEGIEMAYEMIELGCQLSVVTCEILVDGLRKEGQVLQACEILADLSSKRVLPNGYDYFVLVETLCGKGNAIRALELVYELWNQGNVPSLIACTILIDGLRSLGKTEESFRLFEKMLKENIVPDIVTFNCVLQDLCNVQRTTEANKLRLLASSKDLKPDGTTYRILVSGYTWEGSQKEGELLVNEMLDRGFIPDLATYNKLMNGFSNCQRSTLHKVNKID 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2605 492 Gene3D Tetratricopeptide repeat domain 149 356 IPR011990 GO:0005515
Glsi02g2605 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 221 255 IPR002885 -
Glsi02g2605 492 SUPERFAMILY HCP-like 164 294 - -
Glsi02g2605 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 186 220 IPR002885 -
Glsi02g2605 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 361 395 IPR002885 -
Glsi02g2605 492 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 72 483 - -
Glsi02g2605 492 NCBIfam pentatricopeptide repeat 223 257 IPR002885 -
Glsi02g2605 492 NCBIfam pentatricopeptide repeat 364 397 IPR002885 -
Glsi02g2605 492 NCBIfam pentatricopeptide repeat 188 222 IPR002885 -
Glsi02g2605 492 NCBIfam pentatricopeptide repeat 258 291 IPR002885 -
Glsi02g2605 492 Gene3D Tetratricopeptide repeat domain 421 488 IPR011990 GO:0005515
Glsi02g2605 492 MobiDBLite consensus disorder prediction 19 38 - -
Glsi02g2605 492 Pfam PPR repeat 188 217 IPR002885 -
Glsi02g2605 492 Pfam PPR repeat 158 179 IPR002885 -
Glsi02g2605 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Glsi02g2605 492 Pfam PPR repeat family 360 409 IPR002885 -
Glsi02g2605 492 Pfam PPR repeat family 220 268 IPR002885 -
Glsi02g2605 492 Pfam Pentatricopeptide repeat domain 425 477 IPR002885 -
Glsi02g2605 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 431 465 IPR002885 -
Glsi02g2605 492 Gene3D Tetratricopeptide repeat domain 357 420 IPR011990 GO:0005515
Glsi02g2605 492 MobiDBLite consensus disorder prediction 1 40 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2605 154 491 Glycosyltransferase AT1G05670 26.844 1.25e-38 147