Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2575 ATGGCGGCGATCGCAAGAATTTTTGGGACCAATCCTGCTTTGCCTCGCTCCGCCCCTCTTTCTCCAGCTCTTCTCAGTATTCGCCGAGGAATTGCCTATAAGCTTTTCGTTGGAGGACTGTCATTTGTCACGACAGAGAAAGGATTGTCAGAAGCATTTTCTGAATACGGTCAAGTTGTTGAAGCTAAAATTGTGATGAACAAGGTATCAGAGAGATCTAAAGGGTTTGGGTTTGTCACCTTTGCTTCAGAGGATGAGGCTGAGAATGCCATAACAGGGATGAATGGAAAGGCACTTAATGGACGTGTTATTTTTATCGATTATGCAAAACCCAAATCCGACATTGGCGGTGGAATGCCAATTGCTAGAGGACCTCCTGAACCAACTGCAGACAATTAA 399 0.4486 MAAIARIFGTNPALPRSAPLSPALLSIRRGIAYKLFVGGLSFVTTEKGLSEAFSEYGQVVEAKIVMNKVSERSKGFGFVTFASEDEAENAITGMNGKALNGRVIFIDYAKPKSDIGGGMPIARGPPEPTADN 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2575 132 Gene3D - 22 115 IPR012677 -
Glsi02g2575 132 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 29 118 - -
Glsi02g2575 132 SUPERFAMILY RNA-binding domain, RBD 33 124 IPR035979 GO:0003676
Glsi02g2575 132 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 104 IPR000504 GO:0003723
Glsi02g2575 132 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 111 IPR000504 GO:0003723
Glsi02g2575 132 SMART rrm1_1 34 107 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2575 Glsi-ChrGlsi02 75583028 75584675 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2575 35 114 Eukaryotic Initiation Factors Gene Family AT2G23350 36.250 7.80e-10 53.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2575 02 75583028 75584675 Glsi02g2575 02 75583028 75584675 ECH