Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2570 ATGTCAATAAATCACTTCTCTTCGGACATTCCAGAGACACTCTGGTGGACTCAGCAGCAGCAATCCATCCTAATGGAAAACTCCTCCACTTCTGGTTCTGGACCACCCGTTAACCCCTTTTGGCCCTCCCAACTCTACCATCACCCCCCTACTTCCTCCATCTATACCACCGCACCCCGTTTCAACCTCAATCAAGACGAAGAAGAAGAAGACGACGACGACGTACAACCACCCCTCAATGGCCAAGCCACCGGCTGCTCACGCTCAGGAGAAGAAGAAGACGAAAAGGAGCCCATGTTCGAGAAGCCATTAACACCCAGCGACGTGGGCAAGCTCAACCGCCTCGTCATCCCAAAACAGCACGCCGAGAAATACTTCCCACTGGGCGCGGGCGGCGATTCGGGCGAGAACAAGGGTCTATTACTGAGTTTCGAGGACGAGTCGGGGAAGTGCTGGAGGTTCCGTTACTCTTATTGGAACAGTAGCCAGAGCTACGTCTTGACAAAAGGTTGGAGCCGTTACGTCAAGGATAAGCGCCTTGACGCGGGCGACGTCGTTTTGTTCCAGCGGCACCGTGCCGATGCTCAGCGCTTTTATATCAACTGGAGGCGCCGCCAGCAGCATAGTGGGTCGTCCCTTGCGCAAGTTAGCAGAGTTAGCAATAGTAATAATAACAACAGCAAGGGATTTGGCGGTGGTGGTGCGGGTGTAGGATGGACCACCAGAGGTTTCTACTCTGCGTATCCTTATCCTACGCATCAGCCGTGGCCATACCAACCTGAAAGTCTTCATGCAGGAAGAGAACCCGAAGCTCAGACGCAAACGACGCCGGTGGGAAACAATTCCAAGGTACTGAGGCTATTCGGGGTAAACATGGAATGCCAACCAGAACCAGATGAATCCGGACTTTCCAGACCCGAGTGCTCCTACACGTCATCATCAAACCAGGGTACATCCACCCACCACCACTTCTACCAATATCATCATCAACCTTCTCATACTTCCAATCCCCCTCACCTTCACATGGTACGTCAACAATCATTCTTCTAA 1050 0.5248 MSINHFSSDIPETLWWTQQQQSILMENSSTSGSGPPVNPFWPSQLYHHPPTSSIYTTAPRFNLNQDEEEEDDDDVQPPLNGQATGCSRSGEEEDEKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGAGGDSGENKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFQRHRADAQRFYINWRRRQQHSGSSLAQVSRVSNSNNNNSKGFGGGGAGVGWTTRGFYSAYPYPTHQPWPYQPESLHAGREPEAQTQTTPVGNNSKVLRLFGVNMECQPEPDESGLSRPECSYTSSSNQGTSTHHHFYQYHHQPSHTSNPPHLHMVRQQSFF 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2570 349 MobiDBLite consensus disorder prediction 66 105 - -
Glsi02g2570 349 MobiDBLite consensus disorder prediction 305 320 - -
Glsi02g2570 349 ProSiteProfiles B3 DNA-binding domain profile. 100 206 IPR003340 GO:0003677
Glsi02g2570 349 MobiDBLite consensus disorder prediction 211 233 - -
Glsi02g2570 349 MobiDBLite consensus disorder prediction 26 45 - -
Glsi02g2570 349 MobiDBLite consensus disorder prediction 295 320 - -
Glsi02g2570 349 SUPERFAMILY DNA-binding pseudobarrel domain 95 207 IPR015300 -
Glsi02g2570 349 Pfam B3 DNA binding domain 100 206 IPR003340 GO:0003677
Glsi02g2570 349 FunFam B3 domain-containing protein 93 215 - -
Glsi02g2570 349 Gene3D - 87 214 IPR015300 -
Glsi02g2570 349 SMART B3_2 100 206 IPR003340 GO:0003677
Glsi02g2570 349 CDD B3_DNA 98 204 IPR003340 GO:0003677
Glsi02g2570 349 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 64 310 IPR044800 GO:0003700
Glsi02g2570 349 MobiDBLite consensus disorder prediction 211 230 - -
Glsi02g2570 349 MobiDBLite consensus disorder prediction 259 278 - -
Glsi02g2570 349 MobiDBLite consensus disorder prediction 88 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2570 Glsi-ChrGlsi02 75546965 75548518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2570 93 300 RAV Transcription Factor Family AT5G06250 51.628 3.57e-68 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Glsi02g2570 B3 3.3e-29 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2570 02 75546965 75548518 Glsi11g1153 11 7214954 7218331 CCT
Glsi02g2570 02 75546965 75548518 Glsi02g2570 02 75546965 75548518 ECH