Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2560 ATGGGACGCGTTCGCACTAAGACCGTGAAGAAGTCCTCACGCCAAGTGATAGAGAGGTACTATTCTAAGATGACTCTAGATTTTCACACAAACAAAAAGATACTTGAGGAAGTGGCTCTCATTCCCTCCAAGAGGCTCCGCAACAAGATTGCTGGCTTCTCCACTCACCTCATGAAGAGGATCCAGAAGGGTCCTGTTCGTGGCATCTCCCTCAAGCTCCAGGAGGAAGAGCGAGAGCGTAGAATGGACTTCGTCCCCGACGTCTCCGCCATTAAAACCGAGCAAATTGAGGTGGACAAGGAAACCCTTGACATGCTCAGCGCTCTCGGAATGAGCGACATTCCTGGGCTTGTTCAAGTTGACCCTGTCCAAGTGCAGCAGCAGTTCGGTCGGGGGGGTTTTGGTGGAGCTGGTAGGAGGTTAAAGAAATTGCAGGTTACTTTCTCTCAAGAAAAGAATATTCAGAGACTTAATGAGTTTTTTCGGAGTCTTTGTGAACAGCATTTACAGTTACAGGGTAAGGGTGAGAATGAGGTTGTCATACCACCACGACCCCCGAGGCAGACGATTAATCTGTTGAACACCATTATGTTAAATATATGAGATGTTTTTCTTTTTGGGTCATCTAAGGATATTTATAGGAAGTTAAATGGGCAACGAGTAGGCAGGGTGAAAATTCTTCTACGTTTAGTCAAGGTCTATAAAAAAGAATACCCTGTTCACTTGAATATAAGTGATGATGCATTTGATTTTGCTGAGGAGTTTCTGGTATCTACCTACCCCTATGATCTTCTTTATCCTTATTTCCTTTTTGGGGAAGTTATGGGTGAAAATTTTAAATTTACAGTTGGGGGATTTGTTTATTCTTTGTCTTTGGACTTGGCATTGATGTGGTACATCAATAACATTCTAAAAACCTCAGAAAGATCCACAAGACTTGGATTAGCGGAAAAAGCTAGTCACATGAATTCTGAAAGCAAAGCTTCTCAATTTCCGTACTCTATCTCCCAACGAATATCATGTAACTTATTTTGCAGAAAGCAGAGGCAAACCATGAGTCGCAGAAATGGAAATGGTCCAAAGCTTGACTTGAAGCTGAACCTATCCCCACCGAGGGTTGACCGGAGACTGGATTCCCCAAGCCGATCGGTGACGGTTTCACCAACGTCCCCCCCAAGCTCTTGTGTGTCGTCGGAGCTCAACCAAGAGGACAGTCAGAGACACTCAAACAGCCCTGAAGCCACTTCCATGGTGCTAGTAGGGTGCCCACGATGCCTTATGTACGTGATGCTTTCTGAGGATGATCCCAAGTGCCCCAAGTGCAAAAGCACCGTTTTGCTTGATTTCCTCCAAGACTGCAACAACCCCACCATAAGGAGGAGCTAG 1386 0.4531 MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVALIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMSDIPGLVQVDPVQVQQQFGRGGFGGAGRRLKKLQVTFSQEKNIQRLNEFFRSLCEQHLQLQGKGENEVVIPPRPPRQTINLLNTIMLNIXDVFLFGSSKDIYRKLNGQRVGRVKILLRLVKVYKKEYPVHLNISDDAFDFAEEFLVSTYPYDLLYPYFLFGEVMGENFKFTVGGFVYSLSLDLALMWYINNILKTSERSTRLGLAEKASHMNSESKASQFPYSISQRISCNLFCRKQRQTMSRRNGNGPKLDLKLNLSPPRVDRRLDSPSRSVTVSPTSPPSSCVSSELNQEDSQRHSNSPEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLQDCNNPTIRRS 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2560 461 Gene3D - 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
Glsi02g2560 461 SUPERFAMILY Rps17e-like 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
Glsi02g2560 461 Hamap 30S ribosomal protein S17e [rps17e]. 1 63 IPR001210 GO:0003735|GO:0005840|GO:0006412
Glsi02g2560 461 ProSitePatterns Ribosomal protein S17e signature. 41 56 IPR018273 GO:0003735|GO:0005840|GO:0006412
Glsi02g2560 461 MobiDBLite consensus disorder prediction 353 412 - -
Glsi02g2560 461 MobiDBLite consensus disorder prediction 380 412 - -
Glsi02g2560 461 PANTHER 40S RIBOSOMAL PROTEIN S17 1 128 IPR001210 GO:0003735|GO:0005840|GO:0006412
Glsi02g2560 461 Pfam Ribosomal S17 1 120 IPR001210 GO:0003735|GO:0005840|GO:0006412
Glsi02g2560 461 FunFam 40S ribosomal protein S17 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2560 Glsi-ChrGlsi02 75341683 75351945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2560 1 140 Cytoplasmic Ribosomal Protein Gene Family AT5G04800 80.714 1.35e-74 229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2560 02 75341683 75351945 Glsi02g2560 02 75341683 75351945 ECH