Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2552 ATGAAGTGGAATAGTAGAATGAATGACAATGAACAAAAGTCACAGGAGCGGCGTAACAGCTCTGGACATACGAAGGCAATGAATAGTCCCTTCAAAACTCCTTTGTCTGCAAAAGGGGGAAGGAAATTCAATAAGTCAAAAGTTCCTGAGGAAGGCAGACCTGGTCCTCAGACATCCATCTCGAATGCTGGTTCCCCTTCTCCTCTTGCTCCTGCTGGTAGCTGTCGTTTTGACAGTTCCTTAGGTAATTTTGGAAGAACTGTAAATCAACAATTCCTTGAGGTGCAAAAGAGGAGAATATATGACATAACTAATGTCTTGGAAGGCATTGGTCTAATTGAGAAAAAGCTAAAGAACAGAATACATTGGAAGGGATTTGATTCTTCAATGTCTGAGGAGATGGATGGTGATGTCTCTACGCTAAAGGCCCAAGTTGAGAAACTTTCCTTGGAAGAGTTCACTTTAGATGATCAAATAAGGGAAATGCAGGAAAGACTGAGGAGTTTGAGTGAAGATGAAAACAACCAGAACTTCCTTTTCATGCTGAAAATTTTGAAATTTAACTTTTTATTTATACTACTAGTGCATTTCTGCTTGCAGAATGAAACTCTGATAGCAATTAAAGCTCCACATGGAACTACCCTAGAAGTCCCTCATCCTGAGGAAGTTGTTGACTATCCACAGAGGAGATATAGAATCATTCTTAGAAGCACAATGGGTCCCATTGATGTCTATCTTGTCAGTCAATTTGAGGAGAAATTTGAAGAAATGAATGGCATTGAGCCCCATATGAGCTTTCCACTTGCTTCGGGTTCGGGGTCCAATGAACACCTAACAACAGGATTGGTTCCTGTTGAATGCAATGTGAAGGGACTTGAACATCAGGCTCAACTTCCTTCTCATGCATGCTCTGATCTAAATTCTTCACAAGAGTTGGTTGGGGGGATGATGAAGATTGTTCCTTCAGATTTTGATAATGATACAGATTATTGGCTTCTATCGGATGCTGAAGTTAGCATTACAGATATGTGGAAAACAGATTGTATCCCTGATTTTGAATATCTGCGTGCCTTTCTAAACACAGCTAGTCTTAATTGGAATGGGGCGGACATGCTTCATCCTGATTTTGGGATCATCTCAAGGCCACAAACTCCATCACCTAAGTTTGCTGAAGCGCCATCGACAGTGGGTAACTCTTCTCAGAGGTGA 1209 0.4111 MKWNSRMNDNEQKSQERRNSSGHTKAMNSPFKTPLSAKGGRKFNKSKVPEEGRPGPQTSISNAGSPSPLAPAGSCRFDSSLGNFGRTVNQQFLEVQKRRIYDITNVLEGIGLIEKKLKNRIHWKGFDSSMSEEMDGDVSTLKAQVEKLSLEEFTLDDQIREMQERLRSLSEDENNQNFLFMLKILKFNFLFILLVHFCLQNETLIAIKAPHGTTLEVPHPEEVVDYPQRRYRIILRSTMGPIDVYLVSQFEEKFEEMNGIEPHMSFPLASGSGSNEHLTTGLVPVECNVKGLEHQAQLPSHACSDLNSSQELVGGMMKIVPSDFDNDTDYWLLSDAEVSITDMWKTDCIPDFEYLRAFLNTASLNWNGADMLHPDFGIISRPQTPSPKFAEAPSTVGNSSQR 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2552 402 MobiDBLite consensus disorder prediction 1 74 - -
Glsi02g2552 402 Gene3D - 132 249 - -
Glsi02g2552 402 MobiDBLite consensus disorder prediction 1 20 - -
Glsi02g2552 402 MobiDBLite consensus disorder prediction 382 402 - -
Glsi02g2552 402 SUPERFAMILY E2F-DP heterodimerization region 138 249 IPR037241 -
Glsi02g2552 402 SMART E2F_TDP_2 76 125 IPR003316 GO:0005667|GO:0006355
Glsi02g2552 402 SUPERFAMILY "Winged helix" DNA-binding domain 90 126 IPR036390 -
Glsi02g2552 402 CDD E2F_DD 138 249 IPR032198 GO:0046983
Glsi02g2552 402 PANTHER TRANSCRIPTION FACTOR E2F 13 348 IPR015633 GO:0000978|GO:0006357
Glsi02g2552 402 MobiDBLite consensus disorder prediction 387 402 - -
Glsi02g2552 402 Pfam E2F/DP family winged-helix DNA-binding domain 93 125 IPR003316 GO:0005667|GO:0006355
Glsi02g2552 402 Gene3D - 72 127 IPR036388 -
Glsi02g2552 402 Pfam E2F transcription factor CC-MB domain 141 248 IPR032198 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2552 Glsi-ChrGlsi02 75281005 75284007 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2552 20 361 E2F-DP Transcription Factor Family AT2G36010 52.830 8.32e-106 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Glsi02g2552 E2F_CC-MB 2.6e-24 No_clan