Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2533 ATGGATGAGGCGTCTAACCGAACCATTTTGTTAAGCACTGGGGTTTCAGTGTTCCATTTGAACCTCGCTTCACCCGCCATGGACGAGCGTTTTCTGAAGCTTGTTTCCATCCTCATTCTCTCACTTGCTGTAGTGGGTTTTAGTGCCACTGACCCAAATGATGTTAAGATTCTCAACCAATTCAGAAAAGGCTTGGCCAACCCGAAGCTGCTGCCGTGGCCGGAAGATGGCGGGGACCCATGTGGCAATCCTCCTTGGAAGTATATCTACTGCAAGGGCAACAGAGTTTCCCAGATTCAGGCTAAGAACTTGAGCTTGAGCGGTCCTCTTCCTCAGAATTTCAACCAGCTCTCAATGCTAGAAAATATAGGCCTCCAGAACAATAAACTGAACGGGCCTTTACCGTCTTTCAGTGGGTTATCCAAGTTGCAATATGCATACTTGGATTACAATGACTTCGATTCCATTCCGGCTGATTTCTTTGACGGGCTTGTCAGTCTGGAAGTTTTGGCATTGGATAACAATAATCTCAATGCTAGTACTGGGTGGCAGTTGCCCTCTCGGTTGCAAGGTTCAACACAATTAACCAATCTTTCCTGTCTGAGTTGCAACTTGGCCGGTCCATTACCGAGTTTTCTGGGGAATTTGTCCTCTCTGTCAGTCTTGAAACTTTCGGGCAACAATTTGACCGGTGAAATCCCGGCGACTTTGAACGGCACGATTTTGCAGGTTCTATGGTTGAACAATCAGCAGGGTGGCGGTCTCACAGGTCCTATTGATGTGGTGACAACCATGACTTCGCTTACGAGTCTGTGGCTTCATGGAAATCAATTCACAGGGACCATTCCAAGGAGCATTGGGGATTTAACTTCTCTCAAGGATCTCAATCTCAACGGTAACCAGCTCGTTGGCCTAATCCCAGATGCTTTGGGTAAAATGGAATTGGACAGTCTTGATTTGAGCAATAACCACCTAATGGGTCCGATCCCAAATTTCAGGGCAGCCAAAGTCACTTATGATTGGAATGCTTTTTGTCAATCCAGACCAGGGATTCCGTGCGCATTTGAAGTCACGGCTCTTCTGGAATTTTTGGATGGGTTGAAGTATCCTTTAAATCTAGTTGATTCTTGGTCTAATAATGATCCATGTAAAGGGCCATGGTTGGGATTAAATTGCGATGCCAATGGAAAGGTGTCTTTGATTAATTTTCCCAAATTTAATCTCAATGGTACTCTAAGTCCCTCAGTTGCAAACTTAGGTTCTCTTGCTGAGATCAGATTGGGGGGCAACAATCTGAGCGGTCAAATACCCAGTAACTGGACTAGCTTGAGTTCTCTGACATTGTTGGATCTTACTGGCAATAACATTTCCCCTCCGCTGCCACATTTCAGCAGCAAGTTGAGACTTGTAATTGATGGGAACCCTCTATTAAATGGTAACCCTGAAGCTCCTTCATCAGGGAACAGCCCATCATCTGGGAATTCCAAACCTTCACTTGATACTCCTTCAGCCCCATCAACACACACAAGTCCCATTTCCGATAATACTCCTAGATCAAAAAATTCTAACAGGAAAAATTTGTTTGCAATCGTAGCCCCAGTTGCAGGTGTCGCGGCTGCTGCTTTTCTGCTCGTTCCCCTGTATATTTATTGCTGTAAGAGGGGAAAAGATGCCTTCCATGCTCCAAGTTCGCTAGTAATCCACCCTAGAGATCCATCTGATTCAGACAATATGGTAAAGATTGCCGTGGCTAACAATACCTATGGAAGCATTTCCACGTTAACAGGGAGTGGGTCTGGTAGTAGAAACAGCAACGCAATTGGGGATTCTCATGTCATTGAAGCTGGAAATCTAGTGATATCAGTTCAAGTTCTTCGTAATGTGACGAAGAATTTTGCTCCGGAGAATGAGCTTGGCCGTGGTGGATTTGGTGTCGTATATAAGGGAGAATTGGATGATGGGACGACAATAGCAGTAAAAAGAATGGAAGCTGCTATGATCAGTAGTAAAGCCTTGGATGAATTCCAGTCTGAAATTGCAGTTCTATCAAAAGTTCGACACCGTCATCTAGTGTCTCTCCTGGGTTACTCTATTGAAGGTAACGAGAGAATTCTAGTTTATGAGTATATGTCACAAGGGGCTCTCAGTAAGCATCTCTTCCATTGGAAGAGCTTTAAACTGGAGCCTCTTTCTTGGAAGAGGAGGCTCAATATTGCCTTGGACGTTGCTAGAGGAATGGAGTATCTTCATAGTCTGGCTCACCAGAGTTTCATTCACAGAGATCTTAAACCTTCAAATATTTTGCTTGGGGATGATTTTAGAGCAAAAGTGTCAGATTTCGGATTGGTAAAACTAGCTCCTGATGGCGAAAAATCTGTAGTAACACAGCTTGCTGGAACCTTTGGATACTTGGCCCCAGAATATGCAGTGACGGGAAAAATCACAACCAAAGCTGATGTTTTTAGTTTCGGGGTTGTGCTAATGGAGCTGTTGACTGGATTGATGGCACTTGATGATAATAGACCTGAGGAAAGCCAATATTTGGCTTCATGGTTCTGGCATATAAAATCTGATAAGGAGAAACTCATGGCTGCTATTGACCCATCCCTTGACATGAAAGAAGAAACGTTTGAGAGCATCTCTATTATTGCCGAGCTAGCTGGGCACTGCACTGCAAGAGAACCAAGCCAACGACCAGATATGGGCCACGCTGTGAATATGCTGGCACCACTTGTTGAAAAATGGAAACCGTTTGATGATGACACTGAGGAGTATTCTGGCATTGATTATAGCCTTCCCCTCAATCAGATGGTGAAGGGCTGGCAAGAGGCAGAAGGAAAGGACTCGAGCTATATGGACCTGGAAGACAGTAAGGGTAGTATCCCTGCAAGGCCTCCTGGATTTGCAGATTCTTTTACTTCTGCTGACGGTCGGTAA 2937 0.4477 MDEASNRTILLSTGVSVFHLNLASPAMDERFLKLVSILILSLAVVGFSATDPNDVKILNQFRKGLANPKLLPWPEDGGDPCGNPPWKYIYCKGNRVSQIQAKNLSLSGPLPQNFNQLSMLENIGLQNNKLNGPLPSFSGLSKLQYAYLDYNDFDSIPADFFDGLVSLEVLALDNNNLNASTGWQLPSRLQGSTQLTNLSCLSCNLAGPLPSFLGNLSSLSVLKLSGNNLTGEIPATLNGTILQVLWLNNQQGGGLTGPIDVVTTMTSLTSLWLHGNQFTGTIPRSIGDLTSLKDLNLNGNQLVGLIPDALGKMELDSLDLSNNHLMGPIPNFRAAKVTYDWNAFCQSRPGIPCAFEVTALLEFLDGLKYPLNLVDSWSNNDPCKGPWLGLNCDANGKVSLINFPKFNLNGTLSPSVANLGSLAEIRLGGNNLSGQIPSNWTSLSSLTLLDLTGNNISPPLPHFSSKLRLVIDGNPLLNGNPEAPSSGNSPSSGNSKPSLDTPSAPSTHTSPISDNTPRSKNSNRKNLFAIVAPVAGVAAAAFLLVPLYIYCCKRGKDAFHAPSSLVIHPRDPSDSDNMVKIAVANNTYGSISTLTGSGSGSRNSNAIGDSHVIEAGNLVISVQVLRNVTKNFAPENELGRGGFGVVYKGELDDGTTIAVKRMEAAMISSKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERILVYEYMSQGALSKHLFHWKSFKLEPLSWKRRLNIALDVARGMEYLHSLAHQSFIHRDLKPSNILLGDDFRAKVSDFGLVKLAPDGEKSVVTQLAGTFGYLAPEYAVTGKITTKADVFSFGVVLMELLTGLMALDDNRPEESQYLASWFWHIKSDKEKLMAAIDPSLDMKEETFESISIIAELAGHCTAREPSQRPDMGHAVNMLAPLVEKWKPFDDDTEEYSGIDYSLPLNQMVKGWQEAEGKDSSYMDLEDSKGSIPARPPGFADSFTSADGR 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2533 978 SMART LRR_typ_2 216 240 IPR003591 -
Glsi02g2533 978 SMART LRR_typ_2 289 312 IPR003591 -
Glsi02g2533 978 SMART LRR_typ_2 265 288 IPR003591 -
Glsi02g2533 978 SMART LRR_typ_2 140 163 IPR003591 -
Glsi02g2533 978 SMART LRR_typ_2 443 467 IPR003591 -
Glsi02g2533 978 SMART LRR_typ_2 164 191 IPR003591 -
Glsi02g2533 978 ProSiteProfiles Protein kinase domain profile. 632 912 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g2533 978 FunFam Leucine-rich repeat receptor-like kinase 355 480 - -
Glsi02g2533 978 SMART serkin_6 632 912 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g2533 978 SUPERFAMILY L domain-like 356 478 - -
Glsi02g2533 978 Gene3D Phosphorylase Kinase; domain 1 596 709 - -
Glsi02g2533 978 FunFam Receptor-like kinase TMK4 52 350 - -
Glsi02g2533 978 CDD STKc_IRAK 638 911 - -
Glsi02g2533 978 Gene3D Ribonuclease Inhibitor 355 480 IPR032675 -
Glsi02g2533 978 ProSitePatterns Protein kinases ATP-binding region signature. 638 660 IPR017441 GO:0005524
Glsi02g2533 978 MobiDBLite consensus disorder prediction 945 978 - -
Glsi02g2533 978 MobiDBLite consensus disorder prediction 479 522 - -
Glsi02g2533 978 SUPERFAMILY Protein kinase-like (PK-like) 611 908 IPR011009 -
Glsi02g2533 978 MobiDBLite consensus disorder prediction 477 522 - -
Glsi02g2533 978 FunFam receptor protein kinase TMK1 594 709 - -
Glsi02g2533 978 FunFam receptor protein kinase TMK1 710 927 - -
Glsi02g2533 978 ProSitePatterns Serine/Threonine protein kinases active-site signature. 757 769 IPR008271 GO:0004672|GO:0006468
Glsi02g2533 978 Gene3D Ribonuclease Inhibitor 51 350 IPR032675 -
Glsi02g2533 978 SUPERFAMILY L domain-like 49 332 - -
Glsi02g2533 978 Gene3D Transferase(Phosphotransferase) domain 1 710 928 - -
Glsi02g2533 978 Pfam Protein tyrosine and serine/threonine kinase 635 907 IPR001245 GO:0004672|GO:0006468
Glsi02g2533 978 Pfam Leucine rich repeat N-terminal domain 356 393 IPR013210 -
Glsi02g2533 978 Pfam Leucine rich repeat N-terminal domain 52 91 IPR013210 -
Glsi02g2533 978 Pfam Leucine rich repeat 267 325 IPR001611 GO:0005515
Glsi02g2533 978 PANTHER OSJNBA0070M12.3 PROTEIN 36 978 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2533 Glsi-ChrGlsi02 75164745 75168482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2533 95 908 Receptor kinase-like Gene Family AT5G49660 29.804 1.15e-82 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Glsi02g2533 PK_Tyr_Ser-Thr 4.1e-47 CL0016