Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2528 ATGGCGACGTACTTTCATGGTAATTCGGAAATCCAAGCACCTGATGGCCTTCAAACTCTTGTGCTCATGAACCCGGGTTACATCCAGTACTCCGACACACCGCCGCCGCCACCCTCGCATCCCAGCAACCTTGTCTTCCTCAATTCTGCCGCAACTATCGCTGCCAACAACTCGCTCGCTCCTCTCCAACACGCGCCACCGACTCACACCCAACAATTCGTGGGTATCCCTCTACCCGCCACCGCCTCCCAAGACCCCAGCCAGCAGTCCATGCATGCCCATCACGACGTCTCTGCCCTGCATGGATTTGTGCCGCGCATGCAGTACAATCTGTGGAGTACAATTGACCCGAACGCGGCGGCGCGTGAAACTCCACGCGCTCAGCAGGGTTTGTCGCTGAGCCTTTCCTCCCAGCAAGTGGGGATGGGGTCTTTCCGGGTTGATCGTGACGTAGCATCACAGGGTCAAGCGCCTGCTATGTCTGGCGATGATGTGCGTCTGTCAGGTGGGTCATCGTCTTCGGCCTCTGGGGTTACCAACGGCGTTTCGGGCATTCAGAGTGTGCTTCTGAGCTCTAAGTACCTGAAGGCAGCGCAGGAACTTCTAGACGAGGTCGTCAATGTTAACGATGGGATTAAGGGCGAAATGGCAAAGAAAGCTAGCGGCCAGACAAAAGTGGCTGGAGAGTCATCCACAGCGGCAAGTGGAGATGGTTCAATTGGCGGTGAGGGAAGCGGCAAGCCTACCACTGACCTATCAACTGCCGAGAGACAAGAAATTCAGATGAAGAAGGCGAAGCTAATCAGCATGATTGAGGAGGTGGAGCAAAGGTACAGACAATACCAGCATCAGATGCAGATTGTTAGTTCCTCATTTGAACAAACCGCAGGGATTGGGTCGGCGAGGACATACACAGCACTTGCACTACAAACAATCTCCAAGCAGTTCCGGTGTTTGAAAGATGCAATAGCTGGACAAATTCGAGCTGCAAACAAGAGCTTAGGAGAAGAAGATTGCTTTGGAGGAAAAATTGAAGGTTCGAGGCTTAAATATGTAGATCATCATCTACGGCAACAGCGAGCTCTCCAACAGTTGGGAATGATCCAGCACAATGCTTGGAGACCCCAGAGAGGATTGCCTGAAAGATCAGTTTCTGTTCTTCGTGCTTGGCTCTTTGAGCACTTCCTCCACCCCTACCCCAAAGATTCAGATAAACACATGCTTGCAAAACAAACAGGGCTCACCAGGAGCCAGGTCTCAAATTGGTTCATAAATGCTCGGGTTCGGCTTTGGAAGCCAATGGTGGAAGAAATGTACATGGAGGAGATGAAGGATCAAGAACAGAATGGGTCAGAGGACAAATCAAGCAAGAGCAGTGAAGATCCTACGATAAAAACTGCAGCCCCACAAGAGAAAGGTCCTGCCTCTGCCACTGAAGCTGTAAGTTTCAATTTCAAACAAGACGTTACTTCAAGCCAGAACACCCGGTCAGTTTCAGTTTCTAGACCATCAACGTCACCAGTTGGGGGAAATGTTAGAAACCAGTCAGGATTCAGCTTCATGGGGTCATCAGAATTAGATGGGATCACACGGGGAAGTCCCAAGAAACCAAGGAACCATGAGATTCTGCTGTCCCCACATAGTGTCCCTTCCATTAACGTGGATATCAAGCCAGACGAGGCCAACAATGAGCAAATCTCAATGAAATTTGGGGATGAGAGGCAGAGCAGAGACGGGTATTGTTTCATGGGGAACCAAACAAACTTTATTGGGGGATTTGGGCAATACCCAATTGGAGAAATTGATAGGTTTGACGCAGAGCAATTTACACCTAGGTTTTCTGGTAACGGGGTTTCCCTCACTCTTGGCCTTCCCCACTGTGACTCACTATCAGGAACTCATCAAACATTTCTCTCAAACCAGAACATTCAACTGGGGAGAAGGATGGATCTCAGTGAACCAAACGAGTTTGGTGCCATAAGCACTTCCACTCCTCACTCTTCGGCTGCATTTGAGAACATGGACATGCAGAACCCAAAAAGGTTCGCCGCACAATTGTTGCCAGATTTTGTGGCCTAA 2079 0.5007 MATYFHGNSEIQAPDGLQTLVLMNPGYIQYSDTPPPPPSHPSNLVFLNSAATIAANNSLAPLQHAPPTHTQQFVGIPLPATASQDPSQQSMHAHHDVSALHGFVPRMQYNLWSTIDPNAAARETPRAQQGLSLSLSSQQVGMGSFRVDRDVASQGQAPAMSGDDVRLSGGSSSSASGVTNGVSGIQSVLLSSKYLKAAQELLDEVVNVNDGIKGEMAKKASGQTKVAGESSTAASGDGSIGGEGSGKPTTDLSTAERQEIQMKKAKLISMIEEVEQRYRQYQHQMQIVSSSFEQTAGIGSARTYTALALQTISKQFRCLKDAIAGQIRAANKSLGEEDCFGGKIEGSRLKYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEMKDQEQNGSEDKSSKSSEDPTIKTAAPQEKGPASATEAVSFNFKQDVTSSQNTRSVSVSRPSTSPVGGNVRNQSGFSFMGSSELDGITRGSPKKPRNHEILLSPHSVPSINVDIKPDEANNEQISMKFGDERQSRDGYCFMGNQTNFIGGFGQYPIGEIDRFDAEQFTPRFSGNGVSLTLGLPHCDSLSGTHQTFLSNQNIQLGRRMDLSEPNEFGAISTSTPHSSAAFENMDMQNPKRFAAQLLPDFVA 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2528 692 ProSiteProfiles 'Homeobox' domain profile. 370 433 IPR001356 GO:0003677
Glsi02g2528 692 Coils Coil 257 291 - -
Glsi02g2528 692 CDD homeodomain 373 433 IPR001356 GO:0003677
Glsi02g2528 692 MobiDBLite consensus disorder prediction 480 519 - -
Glsi02g2528 692 Gene3D - 376 455 - -
Glsi02g2528 692 MobiDBLite consensus disorder prediction 217 253 - -
Glsi02g2528 692 SUPERFAMILY Homeodomain-like 374 440 IPR009057 -
Glsi02g2528 692 Pfam Homeobox KN domain 390 429 IPR008422 GO:0003677|GO:0006355
Glsi02g2528 692 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 88 458 - -
Glsi02g2528 692 FunFam BEL1-like homeodomain protein 9 376 438 - -
Glsi02g2528 692 MobiDBLite consensus disorder prediction 152 178 - -
Glsi02g2528 692 SMART prehox3 183 325 IPR006563 -
Glsi02g2528 692 MobiDBLite consensus disorder prediction 224 238 - -
Glsi02g2528 692 SMART HOX_1 373 437 IPR001356 GO:0003677
Glsi02g2528 692 MobiDBLite consensus disorder prediction 443 460 - -
Glsi02g2528 692 MobiDBLite consensus disorder prediction 443 519 - -
Glsi02g2528 692 Pfam Associated with HOX 188 324 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2528 Glsi-ChrGlsi02 75113642 75116065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2528 1 692 Homeobox Transcription Factor Family AT2G35940 51.210 0.0 546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Glsi02g2528 POX 1.6e-48 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2528 02 75113642 75116065 Glsi11g1190 11 7463178 7465581 CCT
Glsi02g2528 02 75113642 75116065 Glsi02g2528 02 75113642 75116065 ECH