Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2526 ATGGATGAAGTTGAAATTCCTCAGTATTTCGTATGCCCTATCTCCCTCCATATTATGAAAGACCCTGTTACTGCTATAACAGGCATCACTTACGACCGTGATAGCATCGAACACTGGCTATTCACCAACAAGAACACCACTTGCCCTGTCACAAAACAGCCTCTCCCAAGAGACTCTGACTTAACCCCTAACCACACCCTTCGCCGCCTAATCCAAGCCTGGTGCACCCAGAATGCCTCACTCGGCGTTGACAGGATTCCAACTCCTAAACCGCCACTTAACAAGTTACAAGTCCTCAGGATCCTCAAAGATCTCAGGGACCCCCAGTTGCATCTTAAAGCGCTCACAAAACTGGAATTGCTTGCTGCCGAGAACGAAAGGAATAAGAAGTGTTTGGCGGAGGCTGGTGTGCCTAACGCCATGATCATGTTCATTTTGACTTGCTTCAGGAAAGGCCAAATCGATGAGGGTCTTGAAGAAGCTCTTAGTTTATTGCAGTTTGTTAAGGTCCCTGCAGAGCAAATCAAGGTGCTTCTTGCGGAAAATGACCAGATATTGGATTCTCTAACGTGGGTTTTAGGCTGTGAAATGGAGGAGAATTCTGAAGCCGTGAAATCCCATGCAGTTATGGTACTCAAAAGAATCATCCAGAAGGCTAGCTCTAATGTTTTGGAGAGGCTAAAACCTGAATTCTTTGAAAGCATTGTGAAAATATTACGAAATGGGATCACCCAACAAGGGATCAAAGCTGCCCTGCAGGCTCTGTTAGCAGTATGTCCTTGGGGAAGAAATCGGAAGATGATGGTGGAAGCTGGTGCAGTTTTTGAATTGATAGAGATAGAATTAGGGACACCTGAAAAGAGAACCACTGAGCTCATACTGGAGATACAATCTCATCTGTGTTCTAGTGCAAGTGGTAGAGCTGAGTTTGTGAGTCATAGAGGTGGCATTGCGGTGTTGACGGACAGAATATTGAAAATATCACCGGCGGTGGATGAAAGAGCCGTATTTATTCTGTCACTGATATCAAAGTTATCAGGAACACAAATTGTGATTCAGGAGATGATGAAGGTAGGAACTGTGTCAAAGCTTTGCATGTTGCTTCAGGCTGATCATCCCACGTATATCAAAGACCAAGCGAGGGAAATACTCAAGTCTCATTCTGAGGTTTGGAAAAATTCTCCTTGCTTTTCTGATCGGTCTTTTTATGCATAG 1215 0.4453 MDEVEIPQYFVCPISLHIMKDPVTAITGITYDRDSIEHWLFTNKNTTCPVTKQPLPRDSDLTPNHTLRRLIQAWCTQNASLGVDRIPTPKPPLNKLQVLRILKDLRDPQLHLKALTKLELLAAENERNKKCLAEAGVPNAMIMFILTCFRKGQIDEGLEEALSLLQFVKVPAEQIKVLLAENDQILDSLTWVLGCEMEENSEAVKSHAVMVLKRIIQKASSNVLERLKPEFFESIVKILRNGITQQGIKAALQALLAVCPWGRNRKMMVEAGAVFELIEIELGTPEKRTTELILEIQSHLCSSASGRAEFVSHRGGIAVLTDRILKISPAVDERAVFILSLISKLSGTQIVIQEMMKVGTVSKLCMLLQADHPTYIKDQAREILKSHSEVWKNSPCFSDRSFYA 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2526 404 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Glsi02g2526 404 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Glsi02g2526 404 SUPERFAMILY ARM repeat 98 374 IPR016024 -
Glsi02g2526 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Glsi02g2526 404 PANTHER WDSAM1 PROTEIN 3 398 IPR045185 GO:0061630
Glsi02g2526 404 Gene3D - 94 393 IPR011989 -
Glsi02g2526 404 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Glsi02g2526 404 SUPERFAMILY RING/U-box 3 82 - -
Glsi02g2526 404 CDD RING-Ubox_WDSUB1-like 7 64 - -
Glsi02g2526 404 FunFam RING-type E3 ubiquitin transferase 1 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2526 Glsi-ChrGlsi02 75103244 75104458 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2526 2 397 U-box Gene Family AT3G11840 42.727 4.86e-120 354