Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2525 ATGCGTATAAATAAGAAACTCAACTCCCACTTTTTCAAACCATTACAACGCCACTACTCCTTTTCAATTCTCAACCTTTTCCTCTCTGCAATCTCTGATAAACTTTCTCTCTCAGCTTTTCTTATCAAAATCCAAACTTTCTGCTTCGGCTTCTCGATTAGTAATTTCCTAGATATGGACGAGATTGACGTTCCTCCATTCTTTCTCTGCCCCATTTCATTAGAAATCTTGAAAGATCCAGTCACTGTCTCTACTGGCATCACCTATGACAGAGAGAATATTGAGAAATGGCTGTTTTCTGGGAAAAACATGACTTGCCCAGTAACCAAACAACCACTAACAGACTCTGCTGATTTGACTCCCAACCACACCCTTCGTCGATTGATTCAAGCATGGTGTACCATGAATGCTTCTCACGGAGTCGAAAGGATTCCAACGCCTAAGCCTCCCATCAGCAAAGCCCAGATTGCCAAACTCCTCAAAGATGCTTCGCAATCCCCTCACTTACAAATTCAATGTCTCCCAAGACTCAAATCCATCGCTTCAGAGAGTGAAGCAAATAAACGTCGCATAGAAGCTGCGGGAGCTGCCGAGTTCTTAGCATCAATCATACTGAACAATACAAATTCTGCAGGTTTGCTTGAAGAGTCTAACCCAGATGATGGATTTGACTTGAAAAGAAGTGCAGGTGATGAAGCCTTAAACATCCTCCATAGCCTTCACCTATCTGAAGCTGGCTTAAAGACTCTCATAGGCTTCGGAAACGGAGAATTTATTGACTCCTTAACGAGAATCATGCAGAGAGGAATCTACGACTCACGAGCTTATGCGGTTTTATTGTTGAAATCAATGTTTGAAGTGGCTGATTCAATGCTCTTAGCCAGTCTAAAAACTGAAATGTTCGTTGAATTAGTACAAGTCCTGAAAGATCAGATTTCACAGCAGGCATCAAAAGCTACTCTTCGAACACTGATTCAAATCTGTACATGGGGAAGAAACAGAATCAAAGCAGTGGAATCAGGGGCAGTTTCGGTATTGATAGAACTTCTTCTTGATTGTAAGGAGAGAAAGCCATGTGAAATGATGCTAGTGGTGTTGGAGATGCTGTGTGGGACTGCTGAGGGACGGGCAGAACTGTTGAGTCATGGAGCAGGGATAGCCATAGTTTCCAAAAAGATTCTAAGGGTATCGAACATGGCAAACGATAGGGCTGTTAGGATTCTGCTGTCCATTTCCAAGTTCTCTGCAACTCATAGTGTTGTTCAAGAGATGCTGCAAGTGGGTGTGGTGGCAAAGCTCTGTTTGGTGGTTCAAGTGGACAGTGGAAACAAGGTCAAGGATAAAGCAAGAGAGATTCTCAAACTGCATGCTTGGGCATGGAGGAATTCTCCATGCATACCTAGCAATTTGCTTTCTTCATACCCAAATAATTGA 1434 0.4275 MRINKKLNSHFFKPLQRHYSFSILNLFLSAISDKLSLSAFLIKIQTFCFGFSISNFLDMDEIDVPPFFLCPISLEILKDPVTVSTGITYDRENIEKWLFSGKNMTCPVTKQPLTDSADLTPNHTLRRLIQAWCTMNASHGVERIPTPKPPISKAQIAKLLKDASQSPHLQIQCLPRLKSIASESEANKRRIEAAGAAEFLASIILNNTNSAGLLEESNPDDGFDLKRSAGDEALNILHSLHLSEAGLKTLIGFGNGEFIDSLTRIMQRGIYDSRAYAVLLLKSMFEVADSMLLASLKTEMFVELVQVLKDQISQQASKATLRTLIQICTWGRNRIKAVESGAVSVLIELLLDCKERKPCEMMLVVLEMLCGTAEGRAELLSHGAGIAIVSKKILRVSNMANDRAVRILLSISKFSATHSVVQEMLQVGVVAKLCLVVQVDSGNKVKDKAREILKLHAWAWRNSPCIPSNLLSSYPNN 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2525 477 FunFam RING-type E3 ubiquitin transferase 58 142 - -
Glsi02g2525 477 Pfam U-box domain 64 136 IPR003613 GO:0004842|GO:0016567
Glsi02g2525 477 PANTHER WDSAM1 PROTEIN 61 467 IPR045185 GO:0061630
Glsi02g2525 477 SUPERFAMILY RING/U-box 51 139 - -
Glsi02g2525 477 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 143 IPR013083 -
Glsi02g2525 477 SMART Ubox_2 67 132 IPR003613 GO:0004842|GO:0016567
Glsi02g2525 477 SUPERFAMILY ARM repeat 158 461 IPR016024 -
Glsi02g2525 477 Gene3D - 152 472 IPR011989 -
Glsi02g2525 477 CDD RING-Ubox_PUB 65 116 IPR045210 -
Glsi02g2525 477 ProSiteProfiles U-box domain profile. 63 139 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2525 Glsi-ChrGlsi02 75095729 75097162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2525 60 475 U-box Gene Family AT2G35930 58.095 8.83e-176 498
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2525 02 75095729 75097162 Glsi02g2525 02 75095729 75097162 ECH