Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2521 ATGAATGACTTGTTCTCTGGCTCCTTCTCTCGCTTCCGTAGCGAGGGATCGTCGCCCGACCACCATGTCGTCGAGATGGGTTCCCTTACGGCCTCCGACGGCGTTGTCAACTTCGACAAGTTCTTCCAGGACGTGGAGTCGATCAAGGAGGAGCTCAAGGAGCTCGAAACACTCAACCAGAACCTGCGGAGCTCTCTTGAGCAGAGCAAGACCCTCCACAATGCCAAGGCCGTCAAGGACCTTCGCTCTCGAATGGACAACGATGTCGTTCTTGCTCTCAAGAAGGCCAAACTCATCAAGCTCAAATTGGAGGCCGTGGACCGATCCAACGCAGCCAACCGGAGCCTTGCCGGTTGCGGACCAGGGTCGTCGTCCGAGCGGACTCGGACATCCGTGGTCAACGGGTTGAACAAGAAGCTGAAGGACTCCATGGAGAGCTTCAATAACCTCAGGCAGCAGATCTCCTCCGAATACCGGGAGACTGTACAACGCAGGTATTTCACGGTCACCGGAGAGAATCCTGATGAGAAGACCGTCGACCTCTTGATCTCTTCAGGTGAGAGTGAGACGTTCCTTCAGAAAGCCATCGAAGAACAAGGGAGGGGTAGAATTCTGGACACCATCAATGAAATTCAAGAGAGGCATGATGCTGTGAAAGAGCTGGAGAAGAATCTGAATGAGTTGCACCAAGTGTTCCTTGACATGGCAGTGTTGGTGCAATCTCAAGGCGAGCAATTGGACGATATAGAAAGCCATGTGGCGAGAGCTAACTCATTCGTGAGGAGTGGAGCTCAGCAGTTGCAGACTGCAAGGAAGCACCAGAAAAACGCTAGGAAATGGACTTGTTGTGCTATTACGCTTCTGCTTCTCATCATCTTGTTTGTGGTGCTCTTCACTGTCAGACCATGGGAGCGCAATGGTGGTAGTAATCCGGCTCCATCTCAAACACATCCTCCTCCTCCTCCTGCGGTAGCTTAA 978 0.5256 MNDLFSGSFSRFRSEGSSPDHHVVEMGSLTASDGVVNFDKFFQDVESIKEELKELETLNQNLRSSLEQSKTLHNAKAVKDLRSRMDNDVVLALKKAKLIKLKLEAVDRSNAANRSLAGCGPGSSSERTRTSVVNGLNKKLKDSMESFNNLRQQISSEYRETVQRRYFTVTGENPDEKTVDLLISSGESETFLQKAIEEQGRGRILDTINEIQERHDAVKELEKNLNELHQVFLDMAVLVQSQGEQLDDIESHVARANSFVRSGAQQLQTARKHQKNARKWTCCAITLLLLIILFVVLFTVRPWERNGGSNPAPSQTHPPPPPAVA 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2521 325 CDD SNARE_syntaxin1-like 207 269 - -
Glsi02g2521 325 PANTHER SYNTAXIN 46 291 IPR045242 -
Glsi02g2521 325 MobiDBLite consensus disorder prediction 1 20 - -
Glsi02g2521 325 Gene3D - 205 301 - -
Glsi02g2521 325 SUPERFAMILY t-snare proteins 37 263 IPR010989 GO:0016020|GO:0016192
Glsi02g2521 325 Pfam SNARE domain 244 296 IPR000727 -
Glsi02g2521 325 FunFam Syntaxin 132 201 301 - -
Glsi02g2521 325 Pfam Syntaxin 40 243 IPR006011 GO:0016020
Glsi02g2521 325 Coils Coil 208 231 - -
Glsi02g2521 325 ProSitePatterns Syntaxin / epimorphin family signature. 214 253 IPR006012 GO:0005484|GO:0006886|GO:0016020
Glsi02g2521 325 Coils Coil 38 72 - -
Glsi02g2521 325 Gene3D - 37 168 - -
Glsi02g2521 325 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 208 270 IPR000727 -
Glsi02g2521 325 Coils Coil 133 157 - -
Glsi02g2521 325 SMART SynN_4 33 159 IPR006011 GO:0016020
Glsi02g2521 325 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 35 165 - -
Glsi02g2521 325 CDD SynN 38 195 IPR006011 GO:0016020
Glsi02g2521 325 SMART tSNARE_6 203 270 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2521 Glsi-ChrGlsi02 75043340 75044859 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2521 26 322 SNARE and Associated Proteins AT3G11820 70.455 4.45e-148 417