Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2520 ATGAACGACTTGTTCTCGCCGGACCACCACCACCACCGTGACATCCAGATGATGGCCAGAGCGTCGTCACCGTCAACAGACGGCGTTAACCTCGACAAGTTCTTCGAAGAAGTGGAGTTGGTTAAGGATGAGTTCAAGGAACTGGAGCAGCTCCACCGAAGCCTCCGTACTTCTCACGAACAGAGCAAGACCCTTCCCAACGCCAAGGCTGTGAAGGAACTTCGGTCTCGCATGGACGCCGACGTGGCTCTCGCTCTGAAGAAAGCCAAGCTCATTAAGGTCCGATTGGAAGCACTGGACCGCTCCAACGAAGCCACCCGGAGCTTGCCAGGTTGCGGACCCGGGTCTTCTTCGGACCGGACAAGGACCTCCGTGGTGAGCGGTTTAAGAAAGAAGCTGAAGGGCTCCATGGAGAGCTTCAACAACCTAAGACAACAAATATCCTCGGAGTACAGGGAGACCGTACAACGTAGGTACTACAATGCCACCGGCGAGAATCCCGACGACAAAACCATTGACATCCTGATCTCCACCGGTGAAAGCGAAACATTCTTACAAAAAGCGATCCAACAGCAAGGGAGAGCAAGCATTTTGGAGACCATAAATGAGATTAAAGAGAGGCACGACGCAGTGAGGGAGATGGAGAGAAATCTGAATGAGCTGCACCAACTGTTCTTAGATATGGCAGTGTTGGTCCAATCTCAAGGCCAACACGTAGATGATATAGAGAGCAACCTGGCTCGAGCTAATTCCTTCGTAAGGGATGGGGTTCATCACCTGGAGAAAGCAAAATCGCTTCTTGCTGATCCGTTGTTGGGAAATTCTTATCTGGGTTCAGGCTGCATGGCAACTATTCGAATGATTGATATAGCTGTCAACTTCACAGATGGAATGTTCAAAGGAATCTACAACGGCAAGCAATGTCACGTCTCAGATATAGCAACGGTTTTGAGCAGAGCTTGGACTGCTGGGGTTGACCGAATTATTGTAACTGGCGGTTCCCTTGAGGAATCGAGGGAAGCTCTTGCAATTGCAGAAACAGATGGACGACTTTTCTGCACAGTTGGTGTGCATCCAACACGTTGCAAGGAATTTGAGGAGGGTGGAGATCCAGAAAATCATTTTCAGGCTCTTTTGTCATTGGCTAAAGAGGGAATTCAGAAAGGAAAGGTGGTTGCAGTTGGAGAATGTGGATTGGACTATGACAGGCTTCATTTTTGCCCTACAGAGATTCAAAAGAAGTATTTCCAGAAGCAATTTGAATTAGCATATATCACAAAACTGCCAATGTTTTTGCACATGCGAGCAGCTGCTGCAGATTTCTGTGAAATAGTTGAGAGAAATAGGGACAGGTTCATGGCAGGAGTGGCCCATTCATTTACTGGTAGTGCGGAAGATTGTCTTAAGCTTCTCTCATTTGATAATATGTACATAGGCATAAATGGTTGCTCTCTGAAGACAACTGAGAACCTTAATGTTGTGAAGAATATTCCTGTTGAGAGAATGATGATTGAAACAGACTCGCCATACTGTGAAATTAAGAACACTCATGCAGGGATTGGGTTTGTTAAATCCACATGGCCTTCTAAAAAGAAAGAGAAGTATGATCAAGAATGCATTGTCAAAGGCCGCAATGAACCTTGTTTAGTTAGGCAAGTTCTTGAGGTGGTTGCTGGCTGTAAAGGCATTAACAACATGGACAACCTCAGCAGAACATTGTACCACAATACTTGCAGGGTCTTTTTCCCTCATGACTTGGATTCCGCAGCAGATGCTCTTCTAGATGGTGGTAATTCTTCATAA 1803 0.4653 MNDLFSPDHHHHRDIQMMARASSPSTDGVNLDKFFEEVELVKDEFKELEQLHRSLRTSHEQSKTLPNAKAVKELRSRMDADVALALKKAKLIKVRLEALDRSNEATRSLPGCGPGSSSDRTRTSVVSGLRKKLKGSMESFNNLRQQISSEYRETVQRRYYNATGENPDDKTIDILISTGESETFLQKAIQQQGRASILETINEIKERHDAVREMERNLNELHQLFLDMAVLVQSQGQHVDDIESNLARANSFVRDGVHHLEKAKSLLADPLLGNSYLGSGCMATIRMIDIAVNFTDGMFKGIYNGKQCHVSDIATVLSRAWTAGVDRIIVTGGSLEESREALAIAETDGRLFCTVGVHPTRCKEFEEGGDPENHFQALLSLAKEGIQKGKVVAVGECGLDYDRLHFCPTEIQKKYFQKQFELAYITKLPMFLHMRAAAADFCEIVERNRDRFMAGVAHSFTGSAEDCLKLLSFDNMYIGINGCSLKTTENLNVVKNIPVERMMIETDSPYCEIKNTHAGIGFVKSTWPSKKKEKYDQECIVKGRNEPCLVRQVLEVVAGCKGINNMDNLSRTLYHNTCRVFFPHDLDSAADALLDGGNSS 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2520 600 CDD SynN 31 188 IPR006011 GO:0016020
Glsi02g2520 600 SMART tSNARE_6 196 263 IPR000727 -
Glsi02g2520 600 SUPERFAMILY t-snare proteins 29 256 IPR010989 GO:0016020|GO:0016192
Glsi02g2520 600 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 28 158 - -
Glsi02g2520 600 MobiDBLite consensus disorder prediction 105 124 - -
Glsi02g2520 600 SUPERFAMILY Metallo-dependent hydrolases 287 582 IPR032466 -
Glsi02g2520 600 Gene3D - 279 587 - -
Glsi02g2520 600 Pfam Syntaxin 33 236 IPR006011 GO:0016020
Glsi02g2520 600 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 201 263 IPR000727 -
Glsi02g2520 600 PANTHER TATD FAMILY DEOXYRIBONUCLEASE 286 587 - -
Glsi02g2520 600 FunFam Putative tatD related deoxyribonuclease 282 588 - -
Glsi02g2520 600 CDD TatD_DNAse 287 582 IPR001130 GO:0016788
Glsi02g2520 600 MobiDBLite consensus disorder prediction 109 124 - -
Glsi02g2520 600 Coils Coil 201 224 - -
Glsi02g2520 600 Coils Coil 31 51 - -
Glsi02g2520 600 ProSitePatterns Syntaxin / epimorphin family signature. 207 246 IPR006012 GO:0005484|GO:0006886|GO:0016020
Glsi02g2520 600 Gene3D - 29 253 - -
Glsi02g2520 600 CDD SNARE_syntaxin1-like 200 262 - -
Glsi02g2520 600 Pfam TatD related DNase 308 581 IPR001130 GO:0016788
Glsi02g2520 600 FunFam Syntaxin 132 194 269 - -
Glsi02g2520 600 SMART SynN_4 26 152 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2520 Glsi-ChrGlsi02 75026790 75040887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2520 25 264 SNARE and Associated Proteins AT3G11820 71.250 1.47e-118 352