Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2519 ATGGCTGCCGCAGCTACTGCTTCCTCTTCCATCTGCAATAGAATCTATAACCTCTACTTTACTCCCTCTTCCTTCTCAATCACCGGCAAGTTCCCACAAAGACCCATATCCCAAAAACCTCTCAACCTGAACCTGAACCTCAAAGCCCAACTAGTCAATTCCTCTCCTCTCCTCTCCTTTTACCATCTTCATTTGGCTTCCGCTGCCTTCGACGGATTCGAAGCCGCTCAAGACAGCACAAGCGCCCATCAAGAAGACCCACAAGCTGAACCCTTTGAAACATCAGAAGAAGAGGAAGATGAAGAGCAAAAGGTATCGGACTCAAACGAAGCAGGGAGGCTTTATGTAGGGAATTTGCCTTACTCAATGACTTCCTCCCAGTTAGCTGAGATTTTTGGAGAGGCTGGCAATGTGGTGTCTGTGGAGATTGTATACGATCGGGTTACGGATAGAAGCAGAGGATTTGCATTTGTTACAATGGGGAGCACGGAAGATGCTAAAGAAGCCATTCGAATGTTTGATGGCTCTCAAATAGGAGGAAGGACTGTGAAGGTGAACTTACCAGAAGTGCCGAGAGGAGGTGAAAGGCTAGTAATGGGGCCTAAAGTACGGGACAACTACAGAGGCTTTGTAGACAGCCCTCACAAGATCTATGCTGGAAATCTTGGTTGGGGATTGACTTCCCAGGGTCTTAGAGATGCTTTTGCTTCCCAGCCTGGCTTTTTGAGCGCCAAGGTCATCTTTGAAAGGGACAGTGGAAGATCTCGAGGTTTTGGGTTTGTCTCTTTTGAAACTGCTGAGGACGTAGATGCTGCTTTGAATGCTATGAATGGTGTGGAGGTTCAAGACCGGCCTTTGCGACTGAATTTGGCTGCAGAGAGGGCACCTGCATCATCTCCTCCATTAACGGTGGATAATGCGCAACATAATGTTGATAGCTCGGAATTGCTGTCTAGTATCAGCACTTGA 969 0.4757 MAAAATASSSICNRIYNLYFTPSSFSITGKFPQRPISQKPLNLNLNLKAQLVNSSPLLSFYHLHLASAAFDGFEAAQDSTSAHQEDPQAEPFETSEEEEDEEQKVSDSNEAGRLYVGNLPYSMTSSQLAEIFGEAGNVVSVEIVYDRVTDRSRGFAFVTMGSTEDAKEAIRMFDGSQIGGRTVKVNLPEVPRGGERLVMGPKVRDNYRGFVDSPHKIYAGNLGWGLTSQGLRDAFASQPGFLSAKVIFERDSGRSRGFGFVSFETAEDVDAALNAMNGVEVQDRPLRLNLAAERAPASSPPLTVDNAQHNVDSSELLSSIST 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2519 322 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 287 IPR000504 GO:0003723
Glsi02g2519 322 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Glsi02g2519 322 MobiDBLite consensus disorder prediction 76 109 - -
Glsi02g2519 322 PANTHER OS02G0815200 PROTEIN 47 296 - -
Glsi02g2519 322 CDD RRM2_NsCP33_like 216 291 - -
Glsi02g2519 322 SMART rrm1_1 216 289 IPR000504 GO:0003723
Glsi02g2519 322 SMART rrm1_1 113 186 IPR000504 GO:0003723
Glsi02g2519 322 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 190 IPR000504 GO:0003723
Glsi02g2519 322 FunFam 33 kDa ribonucleoprotein, chloroplastic 197 301 - -
Glsi02g2519 322 MobiDBLite consensus disorder prediction 91 105 - -
Glsi02g2519 322 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 293 IPR000504 GO:0003723
Glsi02g2519 322 CDD RRM1_PSRP2_like 113 192 - -
Glsi02g2519 322 Gene3D - 199 300 IPR012677 -
Glsi02g2519 322 SUPERFAMILY RNA-binding domain, RBD 212 298 IPR035979 GO:0003676
Glsi02g2519 322 SUPERFAMILY RNA-binding domain, RBD 109 188 IPR035979 GO:0003676
Glsi02g2519 322 Gene3D - 71 194 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2519 Glsi-ChrGlsi02 75024199 75025863 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2519 99 294 Eukaryotic Initiation Factors Gene Family AT3G16380 30.500 1.64e-21 93.2