Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2518 ATGCAAACTGTTCATTTCAAAGAACCTGAAGGAAGTGTCCACAATTCCGTTGGGCAGTTGTCATCTGTAACATCAGCACCCTGGTGGACTGCCTTAGGGCCTCAACCAATCTTTGGGGAGCCTTGTGGCCAAATGAAAGCTTTTTCATTGGAGCTTCCCAACTTTGCAGACCAACTTGCTGCCACTAAGCATGGAGCAAGAGGAGCTGAACAATTGTTGGAGAAAGGACATACAGCTCAGTTCACTATCTTCCCAGATGCTTGTAAGATATCAAGTGATGCACAAAAGCCTCAGGCAGGCCTATCACTTCAGTCGTCACTTCCTGATCCTCACACTCGTGTTGAACTAGGATTCAGTCATCCTATGATCTGCGCAAAATATCCTTATATGGATCAATTTTATGGGCTCTACTCAACTTATGGACCTCAAATTCCGGGCCGTATAATGCTGCCACTTAACTTGACATCCGATGATGGACCGATTTATGTTAATGCTAAGCAGTACCATGGAATCATCAGGCGTAGGCAGTCCCGTGCGAAGGCTGTGCTGCAGAATAAGATGACCAAACGTCGCAAGCCCTATATGCATGAATCACGCCATCTCCATGCGATGCGGCGACCAAGAGGATGTGGTGGTCGTTTCCTCAATACAAGGACTTTGAAAAGTGAAAGTGAAGTGAATAAAACTGGTGGTGAGGGACAATTCCAGTCGAGTGGTTCTCAGAGTTCTGAAGTGCTGCAATCCGAAGGGGGAACCTTAAATTCGTCAAAGGAAACTAGTGGAAGCAGTCCACATATTTCAGGGTCAGAGGTAACTAGCATGTATTCTCGAGGAGGTCTTGATAGCTTTGGGGTCAACCATCTTGGACCAGTCGTTCACTCTCTGGCAGACATGATGGATAGTGGGCGTGGTATTGTAATGCCCACGAAATGGGTTGCAGCAGCAGGTAACTGCTGCAGCCTTAAAGTTTGA 972 0.4681 MQTVHFKEPEGSVHNSVGQLSSVTSAPWWTALGPQPIFGEPCGQMKAFSLELPNFADQLAATKHGARGAEQLLEKGHTAQFTIFPDACKISSDAQKPQAGLSLQSSLPDPHTRVELGFSHPMICAKYPYMDQFYGLYSTYGPQIPGRIMLPLNLTSDDGPIYVNAKQYHGIIRRRQSRAKAVLQNKMTKRRKPYMHESRHLHAMRRPRGCGGRFLNTRTLKSESEVNKTGGEGQFQSSGSQSSEVLQSEGGTLNSSKETSGSSPHISGSEVTSMYSRGGLDSFGVNHLGPVVHSLADMMDSGRGIVMPTKWVAAAGNCCSLKV 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2518 323 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 160 214 IPR001289 GO:0003700|GO:0006355
Glsi02g2518 323 Gene3D - 157 219 - -
Glsi02g2518 323 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 76 276 IPR001289 GO:0003700|GO:0006355
Glsi02g2518 323 MobiDBLite consensus disorder prediction 217 273 - -
Glsi02g2518 323 ProSiteProfiles NF-YA/HAP2 family profile. 157 217 IPR001289 GO:0003700|GO:0006355
Glsi02g2518 323 SMART cbf3 156 217 IPR001289 GO:0003700|GO:0006355
Glsi02g2518 323 PRINTS CCAAT-binding transcription factor subunit B signature 191 214 IPR001289 GO:0003700|GO:0006355
Glsi02g2518 323 PRINTS CCAAT-binding transcription factor subunit B signature 160 182 IPR001289 GO:0003700|GO:0006355
Glsi02g2518 323 MobiDBLite consensus disorder prediction 205 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2518 Glsi-ChrGlsi02 75020005 75022751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2518 20 323 CCAAT-HAP2 Transcription Factor Family AT3G05690 41.566 9.78e-61 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Glsi02g2518 CBFB_NFYA 1.6e-25 No_clan