Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2514 ATGAACACCACTACTGATTCCTCTGGATTCCTTGGTTCTGGAAGCATCAGCGGCTTTGGCTATGGCATAGGAATTTCAATTGGAATTCTCCTGCTTATCACAACTATCACTCTTGCTTCCTACTTCTGCACCCGGATACAGGTGTCAACTGGTCCAGCTACACAGAGAGGCGTGCCCCCCACTTTTCTTGAACCACCGCATTCAGTAGTTGATATAGGACTAGATGAAGTCACAATTCTGAGTTATCCAAAGCTGCTGTATTCTGAAGCGAAGCTCCAGAAGTCTGATTCCACTGCTACATGCTGCTCCATATGTCTAGCAGATTACAAGGGTGCTGATATGCTTCGGGTACTACCAGATTGTGGGCACCTCTTCCACCTCAGGTGCATAGACCCGTGGTTGAGACTGCATCCCACCTGTCCAGTCTGCAGAACAACTCCAATCCCATCACCACTCTCTACACCTCTGGCTGAGGTGATTCCATTGGCGAGCAGGCAGGATTCATAG 507 0.4892 MNTTTDSSGFLGSGSISGFGYGIGISIGILLLITTITLASYFCTRIQVSTGPATQRGVPPTFLEPPHSVVDIGLDEVTILSYPKLLYSEAKLQKSDSTATCCSICLADYKGADMLRVLPDCGHLFHLRCIDPWLRLHPTCPVCRTTPIPSPLSTPLAEVIPLASRQDS 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2514 168 SMART ring_2 102 143 IPR001841 -
Glsi02g2514 168 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Glsi02g2514 168 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 158 IPR045899 -
Glsi02g2514 168 CDD RING-H2_EL5-like 101 144 - -
Glsi02g2514 168 SUPERFAMILY RING/U-box 83 150 - -
Glsi02g2514 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 148 IPR013083 -
Glsi02g2514 168 Pfam Ring finger domain 102 144 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2514 Glsi-ChrGlsi02 74986335 74986841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2514 6 164 C3H Transcription Factor Family AT2G35910 61.728 1.14e-57 178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2514 02 74986335 74986841 Glsi11g1204 11 7540536 7541054 CCT