LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi02g2508	ATGCCTTCCCATTCAACGACAAATTCAGGTCTACACCATTTGCCCCCATCCAACATCTACGTTAGTGAGAGAGAAGAACGTGTTATAGCTGAGCTAGCTTTTTACTGTATCAGAAAAGCAAAGGGGGAATATGCGCAAGGCATGTGGGGGTCAATTTTTAATGAATTAGAGACAAGAAGATTATTATCATGGGCTTGGAGAAGAGGGTTTAGTGAGAGAGAGAGAGAGAGAGAGAATGGTCTTGACTTTATATGTAGCTTTGAATTTGATGGGAAAGGGCAGGGCAAAGGAAGGCCCATAAGTATAACAATGTCGATAAGCTTTGTGGATACACCGGGGAAGTGTCATGATTGGTGTTTAAAGGCTATGACCCGTTTCTCAGAGAAGATCCGCCTCTCTTCTCTGGTCGTCAAACCGACCCGCTTTCTCTCTCAGAAGCTCACTCTCCTCTCCCTCTCAACCTTCCATCTCTGCAAGTCCCTTGCTCGCTTCTTAGTCTCCAGAACCGTGTCCCTCCTCACCATGGACAATTTATTCGCCGATCACGACGATTACTTCTGGGACCTCGATACCCGTCCTCAACGTCGATTCCTTCCAGAACAAGAGCCTCACTTGGAAAATGAGCCCCTCTACTTGGTTCATTATAGGTGGTGGAAAGAAGCAAAAGGGGATGCTGATCGAGTAGAAAGCGTCCTTTACACTGTGTCAACGAACTCTGGTTCTGACTCAGAAATTGTGCTCCATTTAAGGAAGGAACACAACCACGAGAAAATTAATACTGATGTGGGGTCTTCAGGCCGTCAATATGCCTTGGTTCCTGAAGGATTGTGGTTGCGTGCTCTCAAACGGTGTAGTGATTCTAATAATGCAGTGAAGGATTTTGGGAGCCCCTCCTATGCAGAAGATTGCTGGCCAGACTTGTTCCCCTTGCAAGTTAGAATATTCGATTTATTGGAAACAAATTCACTAGTAGCGAAAATAAGCCAAAAGGAAAATGTGGTTGACTACTACAAGAAAGCTTGTGATATTTTCAGCTCTGAGTATGACCCAGTGCTCATTTTGGACTTCTCAGGTCAGACAACCCAGTTTTTCATAAATGATAATGAGTCTCCTGGACTATCCAGAAAAGGGGTTCTTCTGGAGTTGCAAGTTCATGGACTCTCAAAATCTATCAGGGTTAATGCAAGCAATGAGATATTTGGAGATAGGTTTCCAATATATTCCTCTCACGGTGGCTCTGTCATGATGAATGGAACCACTCACAAAGTAAATTCCTATGTAACAACTACAAACTCCTTTCAAAGGAGTAGCTACAGAGCAGTTGGCTCACTGGGCTTAACAGGATTACAGAATCTTGGAAATACTTGTTTTATGAATAGCGCCGTTCAGTGTTTGGTTCACACCCCAAAGCTTGTTGATTTTTTCCTGGGAGATTACCGAAAAGAGATAAATTATGAAAATCCCTTGGGAATGAATGGAGAACTTGCTTTAGCTTTTGGAGATTTACTTAGAAAGCTATGGTTTCCTGGAGCAAGGCCTGTGGCACCAAGAATGTTCAAGATGAAACTTGCTGATTTTGCTCCTCAGTTCAGTGGTTATAACCAACATGATTCTCAAGAACTTCTTGCTTTTTTGTTGGATGGACTCCACGAAGACCTTAATCGTGTAAAACGCAAGCCATATCATGAAGTTAAGGATGCAGATGGTCGTCCAGATGAAGAAGTGGCAGAAGAATATTGGCGTAATCACCTTGCTCGTAATGATTCCATAATAGTTGATTTGTGCCAAGGTCAGTTCCGGTCAACATTGGTTTGCCCTCTTTGCAAGAAGGTTTCTATCACTTTTGACCCTTTTATGTACCTATCTTTGCCATTACCTTCTACAATGATGCGGACAATTACTTTGACTGTCCTGAGCACTGATGGGATTACACTGCCTTCCACAATCACCATAACATTACCCAAGAGTGGATTATTGATGGATCTTATGAAGGCCTTAGGTGCCGCATGTTCTTTAAGAGATGATGAAACTCTCTTGATGGCTGAGATATACAAGAATCGCATCTGCCGTCTGTTGGAGGAGCCGTCTGATTCATTAGCCTTGATTAGAGATGAAGACAAACTTGTTGCTTATCGATTACAAAAAGATAATGAGGCTAGCCCCTTGGTTGTTTTCATGCATCAGCAGGTGAAAAAGCATTACAGTTTTGGAAGGGAGAAGTTGGTAGAAAGTTTGTTTGGCATTCCTATTGTGGCAAGGTTGCCCAGTGTTTCTTGTGGATATGATATTCGTAGGGAGTTTCTGAAGTTAATCAATCCATTTCTGATGTGCACTGAAGATGTATTATATGAGTACGATAATGGTGATGATGATGTTAACAAAGTTAGTGAAGATAATGAGTTGGGTGATGCTGCTAGTTCTGCGGATTTGGAAAGTGATTCAGATTCAGATTTGGAGGATGACTTCAAATTCTACTTGCCTGCTGCTCTAGGAATAGAGAATGTGAAGATAAAAATGAACAAACCATTACCAGTCACAGTGTTGCCCAAAAAGCTGGAGGTGGTTGTCTTATGGTCGAATAGGATGATTGAAAAGTATGATACATGCCTGCTCAGCTCATTGCCTGAGGTTTTCAAGCCGCAGTTATTCACTAAGAGAACACAAGAATCGGTTTCTGTTTACAAGTGTCTTGAAGCCTTCTTAAAAGAGGAGCCTCTTGGGCCAGAAGACATGTGGTACTGTCCTAGCTGCAAAAAACCTCAGCAAGCAATGAAAAAATTAGATCTTTGGAGATTGCCTGAAATTCTTGTTGTTCATTTGAAGAGGTTTTCATACAGTCGATACTTCAAGAACAAGCTGGAAACATTTGTTGATTTTCCAATCAATGATCTGGACCTCTCAACTTATGTTGCCTACAAGGATAGCCAGTTTTCCAACCATTACATGTTGTATGCAATTAGTTGTCATTATGGAGGCTTGGGAGGAGGTCACTATACAGCATTTGTTCGTTATGGTGATGATAAATGTTACGAGTTTGATGATAGCAGGGTTGTCCCTGCCAGTGAGGACATGATAAAGACTTCTGCTGCGTATGTTCTTTTCTACAGGAGAGTTTAG	3117	0.42	MPSHSTTNSGLHHLPPSNIYVSEREERVIAELAFYCIRKAKGEYAQGMWGSIFNELETRRLLSWAWRRGFSERERERENGLDFICSFEFDGKGQGKGRPISITMSISFVDTPGKCHDWCLKAMTRFSEKIRLSSLVVKPTRFLSQKLTLLSLSTFHLCKSLARFLVSRTVSLLTMDNLFADHDDYFWDLDTRPQRRFLPEQEPHLENEPLYLVHYRWWKEAKGDADRVESVLYTVSTNSGSDSEIVLHLRKEHNHEKINTDVGSSGRQYALVPEGLWLRALKRCSDSNNAVKDFGSPSYAEDCWPDLFPLQVRIFDLLETNSLVAKISQKENVVDYYKKACDIFSSEYDPVLILDFSGQTTQFFINDNESPGLSRKGVLLELQVHGLSKSIRVNASNEIFGDRFPIYSSHGGSVMMNGTTHKVNSYVTTTNSFQRSSYRAVGSLGLTGLQNLGNTCFMNSAVQCLVHTPKLVDFFLGDYRKEINYENPLGMNGELALAFGDLLRKLWFPGARPVAPRMFKMKLADFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKRKPYHEVKDADGRPDEEVAEEYWRNHLARNDSIIVDLCQGQFRSTLVCPLCKKVSITFDPFMYLSLPLPSTMMRTITLTVLSTDGITLPSTITITLPKSGLLMDLMKALGAACSLRDDETLLMAEIYKNRICRLLEEPSDSLALIRDEDKLVAYRLQKDNEASPLVVFMHQQVKKHYSFGREKLVESLFGIPIVARLPSVSCGYDIRREFLKLINPFLMCTEDVLYEYDNGDDDVNKVSEDNELGDAASSADLESDSDSDLEDDFKFYLPAALGIENVKIKMNKPLPVTVLPKKLEVVVLWSNRMIEKYDTCLLSSLPEVFKPQLFTKRTQESVSVYKCLEAFLKEEPLGPEDMWYCPSCKKPQQAMKKLDLWRLPEILVVHLKRFSYSRYFKNKLETFVDFPINDLDLSTYVAYKDSQFSNHYMLYAISCHYGGLGGGHYTAFVRYGDDKCYEFDDSRVVPASEDMIKTSAAYVLFYRRV	1038

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi02g2508	1038	ProSitePatterns	Ubiquitin specific protease (USP) domain signature 2.	981	998	IPR018200	GO:0004843\|GO:0006511
	Glsi02g2508	1038	Gene3D	Cysteine proteinases	704	1038	-	-
	Glsi02g2508	1038	SUPERFAMILY	Cysteine proteinases	445	1038	IPR038765	-
	Glsi02g2508	1038	ProSitePatterns	Ubiquitin specific protease (USP) domain signature 1.	448	463	IPR018200	GO:0004843\|GO:0006511
	Glsi02g2508	1038	Pfam	Ubiquitin carboxyl-terminal hydrolase	447	1035	IPR001394	GO:0004843\|GO:0016579
	Glsi02g2508	1038	ProSiteProfiles	Ubiquitin specific protease (USP) domain profile.	447	1038	IPR028889	-
	Glsi02g2508	1038	PANTHER	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	391	1037	-	-
	Glsi02g2508	1038	Coils	Coil	1038	1038	-	-
	Glsi02g2508	1038	Gene3D	Cysteine proteinases	432	650	-	-
	Glsi02g2508	1038	CDD	Peptidase_C19R	866	1036	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi02g2508	Glsi-ChrGlsi02	74944470	74954184	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi02g2508	882	1038	Miscellaneous Gene Families	AT4G31670	31.250	2.37e-14	75.5