Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2493 ATGCTTCCTCCGCCTAATGTTAATGCTGCAAACGACAATAAAAATACGGAAAATGCAAATGCAGGCCCCGATTCCTCTAAAGATACGACTGCTGCTAAAGATTCTGGTCCTCCAGGCCCAGTTCAAAGTACACCACCTGAACCGGTGAAGATTACCAATGTCGAACCGACGCCGCCGCAACCTGAAAAGCCGGTGAAGCCGGAGGCTAATGATCCGCCCCCTGATACTTCGGATGCTGGGAAAGCTAAGAAACCCACTCATGTGAAAAGGGTGTCCAGTGTTGGACTTCAAGTAGAATCGGTGTTAGGAAGAAAAACTGAAAATTTGAAGGATAAATATAGTCTGGGGAGGAAGCTTGGACAGGGGCAATTTGGAACGACATTCTTTTGTTTAGAGAAGGCAACTGGGAAAGAGTTTGCTTGTAAAACAATTGCCAAGAGAAAATTGACCACTCAAGAGGATGTGGAAGATGTTAGAAGGGAGATTCAGATTATGCACCATTTATCAGGTCACCCCAATGTGATACAAATAATTGGTGCTTATGAGGACGCTGTTGCAGTCCATCTTATTATGGAACTTTGTGCTGGTGGGGAGCTTTTTGACAGAATCATACAGAGGGGGCACTACAGTGAGAGAAAGGCGGCTGAGCTTGCAAGGGTTATAGTCCGTGTTGTTGAGGCTTGCCATTCTTTGGGTGTCATGCACCGGGACTTGAAGCCAGAGAATTTTCTGTTCGTCAACCAGGAAGAAGATGCACCTCTTAAGACAATAGATTTTGGGCTCTCAGTGTTCTTTAGACCGGGTGAAACATTTACTGATGTCGTTGGGAGCCCATACTATGTGGCCCCTGAAGTTCTCCGGAAGCACTATGGTCAAGAATGTGATGTTTGGAGTGCTGGGGTGATCATTTATATTTTACTGAGTGGAGTTCCCCCATTTTGGGATGAGTCGGAGCAAGGAATATTTGAGCAAGTTTTGAAAGGAGAACTTGATTTTATCTCTGAACCTTGGCCTAGCATATCTGAGAGTGCAAAGGATCTTGTTCGAAGAATGCTAATAAGGGACCCTAAGAAGAGAATGACAGCACATGAAGTTCTTTGCCACCCTTGGGTTCGGGTTGAAGGTGTTGCTCCTGATAAGCCTCTTGATTCTGCTGTCTTGTCTCGTTTGAAGCAATTTTCTGCCATGAACAAGCTCAAAAAGATGGCCTTCCGAGTAATTGCCGAAAGTCTGTCTGAGGAGGAAATTGGAGGGCTGAAGCAAATGTTCAAGATGATAGACACAGATAATAGCGGACAGATTACTGTAGAGGAACTGAAAAATGGTTTGGAGAGAGTGGGTGCCAATCTCAAGGATTCTGAAATTCATTGGTTAATGCAAGCGGCAGACATTGATAATAGTGGTGCCATAGACTATGGTGAATTCATAGCAGCCATGCTTCATCTAAATAAGGTTCAGAGGGAGGATCATTTATTTGCAGCTTTCTCCTACTTTGACAAAGATGGGAGTGGCTACATTACACGAGATGAGCTCCAACATGCCTGCGAACAGTTTGGTCTGCAAGATGTTCAATTAGACGACATAATACGCGAAGTTGACCAGGATAATGATGGACGAATTGATTATAGTGAGTTTGTTGCAATGATGGAAGACGTTGGTTTAGGCAAAAAAGGACTAGAGAATACCATGAGTAAAATAGCGGATGCCTCCAAGAAATAG 1719 0.4421 MLPPPNVNAANDNKNTENANAGPDSSKDTTAAKDSGPPGPVQSTPPEPVKITNVEPTPPQPEKPVKPEANDPPPDTSDAGKAKKPTHVKRVSSVGLQVESVLGRKTENLKDKYSLGRKLGQGQFGTTFFCLEKATGKEFACKTIAKRKLTTQEDVEDVRREIQIMHHLSGHPNVIQIIGAYEDAVAVHLIMELCAGGELFDRIIQRGHYSERKAAELARVIVRVVEACHSLGVMHRDLKPENFLFVNQEEDAPLKTIDFGLSVFFRPGETFTDVVGSPYYVAPEVLRKHYGQECDVWSAGVIIYILLSGVPPFWDESEQGIFEQVLKGELDFISEPWPSISESAKDLVRRMLIRDPKKRMTAHEVLCHPWVRVEGVAPDKPLDSAVLSRLKQFSAMNKLKKMAFRVIAESLSEEEIGGLKQMFKMIDTDNSGQITVEELKNGLERVGANLKDSEIHWLMQAADIDNSGAIDYGEFIAAMLHLNKVQREDHLFAAFSYFDKDGSGYITRDELQHACEQFGLQDVQLDDIIREVDQDNDGRIDYSEFVAMMEDVGLGKKGLENTMSKIADASKK 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2493 572 MobiDBLite consensus disorder prediction 39 71 - -
Glsi02g2493 572 Pfam Protein kinase domain 113 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g2493 572 ProSitePatterns EF-hand calcium-binding domain. 427 439 IPR018247 -
Glsi02g2493 572 Pfam EF-hand domain pair 431 481 IPR002048 GO:0005509
Glsi02g2493 572 MobiDBLite consensus disorder prediction 8 32 - -
Glsi02g2493 572 Gene3D Transferase(Phosphotransferase) domain 1 199 376 - -
Glsi02g2493 572 ProSiteProfiles EF-hand calcium-binding domain profile. 414 449 IPR002048 GO:0005509
Glsi02g2493 572 ProSiteProfiles Protein kinase domain profile. 113 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g2493 572 SMART efh_1 524 552 IPR002048 GO:0005509
Glsi02g2493 572 SMART efh_1 418 446 IPR002048 GO:0005509
Glsi02g2493 572 SMART efh_1 454 482 IPR002048 GO:0005509
Glsi02g2493 572 SMART efh_1 490 518 IPR002048 GO:0005509
Glsi02g2493 572 Gene3D Phosphorylase Kinase; domain 1 115 198 - -
Glsi02g2493 572 Pfam EF-hand domain pair 489 550 IPR002048 GO:0005509
Glsi02g2493 572 ProSiteProfiles EF-hand calcium-binding domain profile. 486 521 IPR002048 GO:0005509
Glsi02g2493 572 PANTHER SERINE/THREONINE-PROTEIN KINASE 105 545 - -
Glsi02g2493 572 ProSitePatterns EF-hand calcium-binding domain. 463 475 IPR018247 -
Glsi02g2493 572 ProSiteProfiles EF-hand calcium-binding domain profile. 524 555 IPR002048 GO:0005509
Glsi02g2493 572 FunFam CDPK-related kinase 3 105 273 - -
Glsi02g2493 572 ProSitePatterns EF-hand calcium-binding domain. 533 545 IPR018247 -
Glsi02g2493 572 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Glsi02g2493 572 ProSiteProfiles EF-hand calcium-binding domain profile. 450 485 IPR002048 GO:0005509
Glsi02g2493 572 FunFam Calcium-dependent protein kinase 1 115 198 - -
Glsi02g2493 572 FunFam Calcium-dependent protein kinase SK5 281 376 - -
Glsi02g2493 572 SUPERFAMILY EF-hand 411 550 IPR011992 -
Glsi02g2493 572 MobiDBLite consensus disorder prediction 1 92 - -
Glsi02g2493 572 ProSitePatterns EF-hand calcium-binding domain. 499 511 IPR018247 -
Glsi02g2493 572 SUPERFAMILY Protein kinase-like (PK-like) 111 372 IPR011009 -
Glsi02g2493 572 SMART serkin_6 113 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g2493 572 CDD STKc_CAMK 112 370 - -
Glsi02g2493 572 Gene3D - 378 552 - -
Glsi02g2493 572 ProSitePatterns Protein kinases ATP-binding region signature. 119 146 IPR017441 GO:0005524
Glsi02g2493 572 FunFam Calcium-dependent protein kinase 1 379 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2493 Glsi-ChrGlsi02 74844325 74849911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2493 49 560 EF-hand Containing Proteins AT2G38910 81.641 0.0 879
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Glsi02g2493 Pkinase 2.5e-75 CL0016