Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2460 ATGAGAACTTCATGGGCGGATTCAGTCGACAACTCTGTCATTAGTTCTTCTGGAACCAATGCCTCTCGCCCTTCCCGGTCAGCATATGTTCCTCCACATCTTCGTAATAAGCAACCATCTTCGGACCCCCCTGTAACATCACACTCGTCTTCTTTACCAGCTAATAATCAGGTAAATTTTGGAGGGACAACTGCTGGTTCTCGTGGGGGCAGTTCCTCTAAGCCTGATCATGGTCGGCAGGGATATGGTTCTAGTGGTCGAACTGGTGGAGGTTGGAACAGTAGAGGCGTAGGTTGGGACCGTGGAAGGGAGCGTGAGGTGAACCCATTCGAGGAAGATGAAGCTACAGATAATTCTTTTAGTGAGCAAGAAAGCACTGGCATTAACTTTGAGGCTTATGATGATATCCCTGTGGAAACTAGTGGGGAGAATGTGCCTCCACCTGTAAATAGTTTCGCAGAAATAGACTTGGGTGAGGCATTGAATCAAAATATACGGAGGTGCAAGTATGTCAAACCTACTCCAGTCCAGAGGTATGCCATACCAATTTCTCTTGCAGGGCGTGATCTGATGGCTTGTGCTCAGACAGGGTCAGGCAAGACAGCTGCTTTTTGCTTTCCTATTATAAGTGGAATCATGAGAGGGCCGTATATTCAAAGACCACGTGTAGCACGGACTGCTTTCCCTCTGGCACTTATCCTATCTCCTACGCGGGAGCTTTCATGTCAGATACATGACGAGGCTAAAAAGTTTTCCTATCAAACTGGTGTCAAGGTGGTAGTTGCTTATGGAGGTGCACCTATTAACCAACAGTTGCGCGAGCTTGATAGAGGAGTTGATATCCTTGTGGCAACTCCAGGACGACTTGTAGATTTGCTTGAGAGGGCTAGGGTGTCACTGCAAATGATCAGATATTTGGCTCTTGATGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCTCAAATAAGAAAGATAGTTGAACAAATGGACATGCCTCTTCAAGGCCAGAGACAGACAATGCTGTTTAGTGCCACTTTTCCCAAAGAGATACAGAGACTTGCATCAGATTTTCTTTCGAATTACGTGTTTCTGTCTGTTGGAAGGGTTGGTTCAAGTACTGATCTAATTGCTCAAAGAGTGGAATATGTCCTTGAGTCTGACAAGAGAAGCCACCTCATGGACCTTCTTCATGCTCAGAGAGAAAATGGACTTTATGGCAAGCAAGGCCTGACATTAGTTTTTGTGGAAACAAAGAAAGGAGCTGATGCGTTGGAACATTGGTTGTGTCTCAACGGGTTTCCTGCAACTAGTATTCATGGTGACAGAACACAACAGGAAAGAGAACTAGCATTGAGGTCGTTCAAGAGTGGAAACACACCAATTTTAGTGGCTACAGATGTTGCAGCACGTGGTCTTGATATTCCACGTGTAGCTCATGTGGTCAATTTTGATCTTCCCAATGACATTGATGATTATGTGCACCGGATAGGAAGAACGGGGAGAGCTGGTAAAATGGGATTAGCAACAGCCTTCTTTAATGATAATAATTTGTCATTGGCTAAGCCATTAGCTGATCTGATGCAAGAGGCAAATCAAGAAGTACCTGCCTGGCTCACACGTTATGCAGCAAGGGTTTCCTACGGTGGTGGCAACAGAAATAGGCGTTCTGGGGGAGCCCGCTTTGGTGGCCGAGATTTTAGGAGGGAGGGTGCAGTTAATAAAGGAGCAGATTACTATAGGGGAGCAGGTGGATATGGGGTTCCTGCTAGTTATGGTGGAGGGTATGGTCCAGGGGTGACAAGTGCTTGGGATTAG 1818 0.4626 MRTSWADSVDNSVISSSGTNASRPSRSAYVPPHLRNKQPSSDPPVTSHSSSLPANNQVNFGGTTAGSRGGSSSKPDHGRQGYGSSGRTGGGWNSRGVGWDRGREREVNPFEEDEATDNSFSEQESTGINFEAYDDIPVETSGENVPPPVNSFAEIDLGEALNQNIRRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGPYIQRPRVARTAFPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELDRGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPLQGQRQTMLFSATFPKEIQRLASDFLSNYVFLSVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRENGLYGKQGLTLVFVETKKGADALEHWLCLNGFPATSIHGDRTQQERELALRSFKSGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNDNNLSLAKPLADLMQEANQEVPAWLTRYAARVSYGGGNRNRRSGGARFGGRDFRREGAVNKGADYYRGAGGYGVPASYGGGYGPGVTSAWD 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2460 605 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 230 519 IPR027417 -
Glsi02g2460 605 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 118 543 - -
Glsi02g2460 605 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 392 543 IPR001650 -
Glsi02g2460 605 MobiDBLite consensus disorder prediction 98 112 - -
Glsi02g2460 605 Pfam DEAD/DEAH box helicase 174 354 IPR011545 GO:0003676|GO:0005524
Glsi02g2460 605 MobiDBLite consensus disorder prediction 1 26 - -
Glsi02g2460 605 FunFam Probable ATP-dependent RNA helicase DDX4 112 367 - -
Glsi02g2460 605 SMART ultradead3 169 380 IPR014001 -
Glsi02g2460 605 Pfam Helicase conserved C-terminal domain 389 504 IPR001650 -
Glsi02g2460 605 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 181 365 IPR014001 -
Glsi02g2460 605 FunFam ATP-dependent RNA helicase RhlB 368 547 - -
Glsi02g2460 605 Gene3D - 367 547 IPR027417 -
Glsi02g2460 605 CDD SF2_C_DEAD 377 513 - -
Glsi02g2460 605 MobiDBLite consensus disorder prediction 39 79 - -
Glsi02g2460 605 CDD DEADc_DDX3_DDX4 151 371 IPR044763 GO:0003724|GO:0005524
Glsi02g2460 605 SMART helicmild6 423 504 IPR001650 -
Glsi02g2460 605 MobiDBLite consensus disorder prediction 1 126 - -
Glsi02g2460 605 Gene3D - 105 366 IPR027417 -
Glsi02g2460 605 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 150 178 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2460 Glsi-ChrGlsi02 74590976 74597311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2460 148 536 Eukaryotic Initiation Factors Gene Family AT3G19760 31.122 4.79e-60 204