Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2440 ATGTCACGTCTTATTTGTATATCTATCGTTATAGTGCTTTTTCATGAACCTGCCCGACTTATATGTTACATCCAATCCAAATCATCTATTGTGGATCAGACCATAAAGAACACAAAATGGGTCACGGAGTTCAATTGTAGACGGAACTCCCAAAAGCCACATTTCAAATGCAAAGCTGCAGCAGAAGCCCGCTCCTTAGTCCTTACTCCCAGTAGGAGACACACGTGGTGGACCAATAATCGAACGGAGATACTGCTACTGCCACGTCCAAAAGATGCTTGTGCTGGGATTTGTCTTCATTTTGCCAGTGATGAGCCAGATTTATTGCATTGTGTTTCTATATATGGGCATAGCTTGCTACTGGACAAACGCAGTGTTGCATATCATAAGCTAGTCAATCGAATCAAAACATTTCCCCTTTGTTTTCCCTGTTCTTTCCAGTTTTTGATTGCTTGGCACGAGTCGGGAGCGGTAGTTTTGTGATCTGGATCAGCAATGGCTCCCGGAGGCAGCGCTTGCGGAGAAGTTCTTGAGTCTCACCTAACAATTTCAGATTGTGACAGAGCCAAATCCAAATATAATGCTAATAGTAATAGTCCTCTTATAAAATCTAGCACTGCCTTGGGTGGAAAACATGGAATTATTCCAAAGAATGGTGTGCATGACTTACTCAAGTGCCCTGTTTGCCAGAAATTGATGTATCCCCCCATTCACCAGTGCCCAAATGGCCATACGCTATGTTCAAACTGTAAGATCAGAGTGCATAACCGTTGCCCAACTTGTCACTATGATCTTGAAAATATAAGATGTTTGGCTCTGGAGAAGGTGGCCGAGTCATTAGAACTTCCTTGCAAATATCAGAGTCTAGGTTGTCATGATATATTCCCATATTATACCAAGCTTAAGCATGAGCAAAATTGTCGATTTCGTCCATATAACTGCCCCTATGCTGGATCTGAGTGCTCTGTTATGGGTGACATTCCAACTCTTGTTGCCCATCTTAAGGATGATCACAAGGTTGACATGCACGATGGGTGTACCTTCAACCATCGATATGTCAAATCAAACCCACATGAAGTTGAAAATGCAACATGGATGCTAACTGTTTTCAATTGTTTTGGAAGGCATTTCTGCTTGCACTTCGAGGCTTTTCAGATTGGTGTGGCTCCGGTTTATATGGCCTTTTTACGATTAATGGGTGATGACAATGAGGCAAAGAAATTCAGTTACAGCTTGGAAGTGGGTGCAAACGGCCGCAAACTCATATGGCAAGGAATTCCAAGGAGCATTCGTGACAGTCATAGGAAAGTTCGCGATAGTCAAGATGGACTTATTATTCAGAGGAACCTAGCTCTTTATTTTTCTGGTGGAGATAGAAATGAGTTAAAGTTGAGGATAACTGGGCGTATATGGAAAGAAGATTGA 1425 0.4225 MSRLICISIVIVLFHEPARLICYIQSKSSIVDQTIKNTKWVTEFNCRRNSQKPHFKCKAAAEARSLVLTPSRRHTWWTNNRTEILLLPRPKDACAGICLHFASDEPDLLHCVSIYGHSLLLDKRSVAYHKLVNRIKTFPLCFPCSFQFLIAWHESGAVVLXSGSAMAPGGSACGEVLESHLTISDCDRAKSKYNANSNSPLIKSSTALGGKHGIIPKNGVHDLLKCPVCQKLMYPPIHQCPNGHTLCSNCKIRVHNRCPTCHYDLENIRCLALEKVAESLELPCKYQSLGCHDIFPYYTKLKHEQNCRFRPYNCPYAGSECSVMGDIPTLVAHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRHFCLHFEAFQIGVAPVYMAFLRLMGDDNEAKKFSYSLEVGANGRKLIWQGIPRSIRDSHRKVRDSQDGLIIQRNLALYFSGGDRNELKLRITGRIWKED 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2440 474 ProSiteProfiles Zinc finger SIAH-type profile. 279 339 IPR013010 GO:0008270
Glsi02g2440 474 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 204 473 - -
Glsi02g2440 474 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 337 467 IPR008974 GO:0005515
Glsi02g2440 474 SUPERFAMILY TRAF domain-like 279 471 - -
Glsi02g2440 474 CDD RING-HC_SIAHs 224 262 - -
Glsi02g2440 474 Pfam Seven in absentia protein family 268 467 IPR018121 GO:0005737|GO:0006511|GO:0007275
Glsi02g2440 474 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 215 314 IPR013083 -
Glsi02g2440 474 FunFam E3 ubiquitin-protein ligase SINAT3 276 334 - -
Glsi02g2440 474 ProSiteProfiles Zinc finger RING-type profile. 226 262 IPR001841 -
Glsi02g2440 474 FunFam E3 ubiquitin-protein ligase SINAT5-like 335 467 - -
Glsi02g2440 474 CDD Sina 340 468 - -
Glsi02g2440 474 SUPERFAMILY RING/U-box 220 266 - -
Glsi02g2440 474 Gene3D Classic Zinc Finger 315 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2440 Glsi-ChrGlsi02 74433549 74438684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2440 166 474 C3H Transcription Factor Family AT2G41980 78.317 0.0 510