Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2435 ATGGAGCTGGCATTGAGCTTGGGAGACGCTCCGAAGCCCTTCTCTTTTCTTGACAAGCTCACCAAAATGCCCAACAACGAACCTGGCCTCTGCATAGCACTAGGGACTGATTTCACTGGAATAAACTCACCAGGCGAGGATAAGAGAAGGAGTTCATCATCAGATCCGCCTGTTCAGCTCAATCTCCTTCCTTTGACACCGGTTTCTCGACCCCATCCACCTTCACACCTTCGAATTCCTTGGCTCTCCCATGCATTGGGTATTGAGCGCGTTTCATCAGATGGACCAGTGAGGGCGTTGGATGTGAACCGATTGCCGACAGCCGCGGAACCCGTAGAGGATGCCGACGAGGGTACTGCACTGTCATCCCCTAACAGTGCGATGTCGTCATATCAGATGGATTTCTGTATTAGAAATAATAATGGTGGGAAAAACAAGAGAGAGAATGAGGGGGATGCCGAGAGAGGGAGCGATGATGAAGAGAACGGATCAACTCGGAAGAAACTCAGACTCTCTAAGGAACAATCAGCTTTCCTTGAAGAGAGCTTTAAAGAACACACTACTCTTAATCCTAAACAAAAAATTGCTCTGGCAAAACAATTAAATCTTCGTCCTCGTCAGGTAGAAGTTTGGTTTCAGAACAGAAGGGCGAGGACAAAGTTGAAGCAGACAGAGGTAGATTGTGAGTATTTAAAGAGGTGCTGTGAGACACTGACAGAAGAGAATAGGAGGTTACAGAAGGAACTGCAAGAATTAAGGGCTTTGAAGACCTCTCAGCCATATTACATGCAGCTTCCAGCTACAACTCTCACCATGTGCCCCTCTTGTGAACGGGTAGCTACCAACTCTTCCGCCGGCACCACGGCCACCAACAATGGTTCTCAAATCCCAGTAGGCTTGTCCCTTAGCAAGCCCAAATTACTCCCCTTCGCTAATAATGGTCAAGCCCCCACGAACCAGGACCAAGCTCATCAGACGGCTTCATGA 987 0.4843 MELALSLGDAPKPFSFLDKLTKMPNNEPGLCIALGTDFTGINSPGEDKRRSSSSDPPVQLNLLPLTPVSRPHPPSHLRIPWLSHALGIERVSSDGPVRALDVNRLPTAAEPVEDADEGTALSSPNSAMSSYQMDFCIRNNNGGKNKRENEGDAERGSDDEENGSTRKKLRLSKEQSAFLEESFKEHTTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPYYMQLPATTLTMCPSCERVATNSSAGTTATNNGSQIPVGLSLSKPKLLPFANNGQAPTNQDQAHQTAS 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2435 328 MobiDBLite consensus disorder prediction 136 171 - -
Glsi02g2435 328 Pfam Homeobox associated leucine zipper 222 256 IPR003106 GO:0006355|GO:0043565
Glsi02g2435 328 Gene3D - 170 220 - -
Glsi02g2435 328 CDD homeodomain 166 223 IPR001356 GO:0003677
Glsi02g2435 328 MobiDBLite consensus disorder prediction 307 328 - -
Glsi02g2435 328 SMART halz 222 265 IPR003106 GO:0006355|GO:0043565
Glsi02g2435 328 MobiDBLite consensus disorder prediction 42 73 - -
Glsi02g2435 328 FunFam Homeobox-leucine zipper protein 18 151 227 - -
Glsi02g2435 328 MobiDBLite consensus disorder prediction 312 328 - -
Glsi02g2435 328 Coils Coil 228 258 - -
Glsi02g2435 328 ProSitePatterns 'Homeobox' domain signature. 197 220 IPR017970 GO:0000981|GO:0006355
Glsi02g2435 328 CDD bZIP 215 254 - -
Glsi02g2435 328 SMART HOX_1 164 226 IPR001356 GO:0003677
Glsi02g2435 328 Pfam Homeodomain 166 220 IPR001356 GO:0003677
Glsi02g2435 328 MobiDBLite consensus disorder prediction 141 171 - -
Glsi02g2435 328 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 50 292 - -
Glsi02g2435 328 Pfam HD-ZIP protein N terminus 52 130 IPR006712 GO:0005634
Glsi02g2435 328 SUPERFAMILY Homeodomain-like 160 223 IPR009057 -
Glsi02g2435 328 ProSiteProfiles 'Homeobox' domain profile. 162 222 IPR001356 GO:0003677
Glsi02g2435 328 MobiDBLite consensus disorder prediction 108 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2435 Glsi-ChrGlsi02 74410625 74412025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2435 55 278 Homeobox Transcription Factor Family AT3G60390 52.672 5.29e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi02g2435 HD-ZIP_N 7.4e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2435 02 74410625 74412025 Glsi11g1266 11 7970641 7975946 CCT
Glsi02g2435 02 74410625 74412025 Glsi02g2435 02 74410625 74412025 ECH