Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Glsi02g2432 | ATGGGGGAAGAGACATCGGATGCGATGAACCTTGATTTGAATCTGGGTCCCGGTCCAGAGCCAGCAGCTGGCTCCATAACCAATGAACCTGTAAATTTAGATGATTGGATTGAAGAGCCTCTTCATAGAGTTAGCGAAGCAGTAAGACCTGGGGCTCGACAACGGTGGAGATGGCGGCATCTTCGTAATATCCCACCTGAAGCCCATGTTCATATCGCATCTGAAACCCACCGGAATGTTCATACCCCATCTGAAGCCCAAAATATCTCAATGATGCTAAATCAATTTTTGGTCAATCCTGCTAATGGAAGTGCATTACAGGCTGGTGAAGGTAGTGTTCCAGCTGAAGAAAGAATAGAGGATGCACCAAAAGCTTGTGAAAATAACAATGGTGTTACGGAGGATGAGGCATCAGAGAAGAAGGATGATGTGGAAAAGGGTAGTGGCAATGATGGGAGCTTTTTTGATTGTAATATCTGTTTGGACCTGGCTAGGGATCCTGTTGTGACGTGTTGTGGTCATCTGTTTTGTTGGCCATGCCTCTACCGCTGGCTGCATGTCCATTCAGATGCTAAGGAATGTCCAGTTTGCAAGGGAGAGGTAACGATTAAAAATGTTACCCCAATATATGGTCGTGGGAAAAATGTCCGTGATCCTGAGGAGGATTCTACTCTTAAAACCCCTCACAGACCCCATGCTAGGCGTGTTGAAAGTCTGAGGCAAACTATTCATAGAAATGCATTTGCATTCCCAGTGGAGGAGGTGATTCGACGTCTTGGAAGTAGAATTGATCTTACTCGAGAATTAGTTCAATCACATGAGCCTGACAATACACGCGAAGCAGCAGAGAGAACTAGTTCTTCCTTGCTAAATAGGTTTTTGACACCTCGAGCTATACGGAGAGAGCATAATCTTGGGGCAGCTCCAGATGATGTAGTGGATTTAACTCAAAACAACATTGGTAGCCCTGAGGGAGCAGGAGCAGATAACCGCAGGATTCAATCCCTTTTACTTCGAAGAACACAATCACATAGAACAACGCTTTCTTCTCTTTCATCAGCACTGATTTCTGCTGAAAGGTTTGTTGAGGCATATATCCGTAGCCATTCTATAGGAAGAAATCAAGAGCAGCCTCCACCAGTTGATGACAGAGATTCTTATTCAAGCGTTGCTGCTGTTATAAATTCAGAGAGTCAAGTGGACACTGCTGTAGAAATTGATTCCATGGTATCCTTGTCAACATCCTCTTCCAGGAGGAGAAATGACACTTCTCGAATTTCTGATGTGGATAGTGGAGATTCTCGAGCTCCCAGGCGAAGACGTTTGAACTGA | 1332 | 0.4482 | MGEETSDAMNLDLNLGPGPEPAAGSITNEPVNLDDWIEEPLHRVSEAVRPGARQRWRWRHLRNIPPEAHVHIASETHRNVHTPSEAQNISMMLNQFLVNPANGSALQAGEGSVPAEERIEDAPKACENNNGVTEDEASEKKDDVEKGSGNDGSFFDCNICLDLARDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTIKNVTPIYGRGKNVRDPEEDSTLKTPHRPHARRVESLRQTIHRNAFAFPVEEVIRRLGSRIDLTRELVQSHEPDNTREAAERTSSSLLNRFLTPRAIRREHNLGAAPDDVVDLTQNNIGSPEGAGADNRRIQSLLLRRTQSHRTTLSSLSSALISAERFVEAYIRSHSIGRNQEQPPPVDDRDSYSSVAAVINSESQVDTAVEIDSMVSLSTSSSRRRNDTSRISDVDSGDSRAPRRRRLN | 443 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Glsi02g2432 | 443 | ProSiteProfiles | Zinc finger RING-type profile. | 157 | 198 | IPR001841 | - | |
Glsi02g2432 | 443 | FunFam | E3 ubiquitin-protein ligase RMA3 | 125 | 246 | - | - | |
Glsi02g2432 | 443 | MobiDBLite | consensus disorder prediction | 410 | 443 | - | - | |
Glsi02g2432 | 443 | SUPERFAMILY | RING/U-box | 153 | 210 | - | - | |
Glsi02g2432 | 443 | MobiDBLite | consensus disorder prediction | 133 | 147 | - | - | |
Glsi02g2432 | 443 | MobiDBLite | consensus disorder prediction | 421 | 443 | - | - | |
Glsi02g2432 | 443 | CDD | RING-HC_AtRMA-like | 155 | 198 | - | - | |
Glsi02g2432 | 443 | Pfam | Zinc finger, C3HC4 type (RING finger) | 157 | 197 | - | - | |
Glsi02g2432 | 443 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 135 | 227 | IPR013083 | - | |
Glsi02g2432 | 443 | ProSitePatterns | Zinc finger RING-type signature. | 172 | 181 | IPR017907 | - | |
Glsi02g2432 | 443 | MobiDBLite | consensus disorder prediction | 107 | 147 | - | - | |
Glsi02g2432 | 443 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 127 | 314 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Glsi02g2432 | 443 | SMART | ring_2 | 157 | 197 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Glsi02g2432 | Glsi-ChrGlsi02 | 74399815 | 74401146 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Glsi02g2432 | 1 | 434 | C3H Transcription Factor Family | AT3G58030 | 52.993 | 6.70e-140 | 406 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Glsi02g2432 | 02 | 74399815 | 74401146 | Glsi02g2432 | 02 | 74399815 | 74401146 | ECH |