Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2427 ATGAGTACAATGCACTTTTCTCTGATGGTCAGGTCTCAGTTCCTGGCTGTCATCTTCACTATCTTTGCCCTTGCATGTACCCAAGTTAGCTGCTTTTCTTTCAATTTCTCTGTCTTCGAACGAAAAGATGAAGCTGAATTAATTTTGAGCGATTTTTCCCGTGTATTCAGAGATGCCATCCAAGTGACACCTGATGCAATCGGTGAAGACTTTAGAAATAAATCCGGAAGGGCCTTCTACAAGAAGCCATATAGATTGTGGAGCAAGAAGAAAAACCAAACTGCAGCCTTTAATACCACCTTCGTGCTGAATATCAACCCCCAAACTCCTTCAGCAGCTGAAGGTTTGGCCTTCATATTAAGTGGGGATACCAGTCTCCCACAAGATAGCTACGGAAGATGGCTTGGCATTGTGAATGCTACTACAAATGGCACTTCTCAAGCTGGGATTTTAGCAGTGGAATTCGATACCAGAAATGACTACAAGGAAGATGGCCCTGATAACCATGTTGGCGTGAACGTGAATGGTATATACTCCATTAGACAGGTGCCATTACTGCCCTTGGGAATCAATATTTCGTCGGCCAAGGATGTGACGGTGACGATTCAGTATGCTGATGATACAATTACTGTTTTTGGTTCCATGAATGGAACCGCACAAGACATGAAGCTTTTGTTGATTTCTCCACGTCTCAATGTATCTTCCTATCTACCGGAAAAGGTTTTTCTGGGATTCTCTGGTTCAACAAGTAATAACACTGAGCTGAACTGCATCAAAGCATGGGAATTTAACGGCGTAGATATTGTAGATGGAAATCAAGAGCTGTTGTGGGTTTGGATCACAGTTCCAATAGTGATTATAATAGGTGGGGTGGTCTTTTTGTTCATTTGGCAGAGAAAACGCAGTAAGGAGATCCCAGAGGATGCCTATCCCAGGATAGAAGATCAGATTCAGCGTTCCTCTATGGGTCCGAAGAAGTTCCGGCTGAGGGAAATCAGAAAGGCAACAGGTAGTTTCGATCCCCAAAACAAGCTTGGGGAAGGTGGTTTCGGAACAGTGTATAAGGGAGTCCTACAGGGAAATAAGGAGATAGCAGTGAAGAGAGTGTCCAAAGATTCACGTCAAGGCAAGCAAGAGTTCATAGCAGAAGTCACCACAATTGGCAGCCTTCACCACAAAAATATGGTTAAACTGATTGGCTGGTGTTACGAGAAGCGAGAACTCCTCCTTGTCTACGAGTTCATGCCTAACGGGAGCCTAGACAAGTACCTTTTCGGTGATCATGATGAGTGTGGCAGCAAATCAGAGGGATCAAATCTGTGCTGGGGAACTAGACGTAGCGTGATATATGGGGTGGCCCAGGCCCTTGACTATCTTCACAATGGGTGCGACAAGAAGGTGCTTCACAGGGACATCAAGGCCAGCAATATAATGCTGGACTCAGACTTCAATGCCAAGCTGGGAGACTTTGGACTTGCTCGCACCATTCAGAAAAGAAATGAAACTCATCACTCCACAAAAGAGATTGCAGGAACACCGGGTTACATGGCCCCAGAAACCTTTCTTACTAGCAGGGCAACAGTGGAAACCGACGTGTATGCATTTGGAGTTCTGACATTGGAAGTAGTGTGTGGAAGGAGGCCAGGGAATCTGTATGCCCAGAACGACTATAAGAACAGTATCGTGCATTGGGTGTGGGAGCTTCATGGGAAGGGAAAAATAGTTGATGGGGTAGATAGTAGAATAAGAAAGGAGATTAAGGAGGAAGAAGGGGAAGATGTGCTTGTTCTGGGGTTGGCGTGTTGTCATCCAAACCCACACCATAGACCCTCCATGAAGACAGTTCTGCAGGTGCTCACGGGGGAAGCGCCTCCGCCGGAGTTACCAAAGGAAAGGCCTGCTTTCGTGTGGCCTGCCATGCCGGCTTCATTCAAAGATAACTCTTTCACTGGATCCCAACTCACTCCATTCACAGAACTCACCGGCAGATGA 1992 0.4603 MSTMHFSLMVRSQFLAVIFTIFALACTQVSCFSFNFSVFERKDEAELILSDFSRVFRDAIQVTPDAIGEDFRNKSGRAFYKKPYRLWSKKKNQTAAFNTTFVLNINPQTPSAAEGLAFILSGDTSLPQDSYGRWLGIVNATTNGTSQAGILAVEFDTRNDYKEDGPDNHVGVNVNGIYSIRQVPLLPLGINISSAKDVTVTIQYADDTITVFGSMNGTAQDMKLLLISPRLNVSSYLPEKVFLGFSGSTSNNTELNCIKAWEFNGVDIVDGNQELLWVWITVPIVIIIGGVVFLFIWQRKRSKEIPEDAYPRIEDQIQRSSMGPKKFRLREIRKATGSFDPQNKLGEGGFGTVYKGVLQGNKEIAVKRVSKDSRQGKQEFIAEVTTIGSLHHKNMVKLIGWCYEKRELLLVYEFMPNGSLDKYLFGDHDECGSKSEGSNLCWGTRRSVIYGVAQALDYLHNGCDKKVLHRDIKASNIMLDSDFNAKLGDFGLARTIQKRNETHHSTKEIAGTPGYMAPETFLTSRATVETDVYAFGVLTLEVVCGRRPGNLYAQNDYKNSIVHWVWELHGKGKIVDGVDSRIRKEIKEEEGEDVLVLGLACCHPNPHHRPSMKTVLQVLTGEAPPPELPKERPAFVWPAMPASFKDNSFTGSQLTPFTELTGR 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2427 663 PANTHER - 64 626 - -
Glsi02g2427 663 Gene3D - 30 270 - -
Glsi02g2427 663 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Glsi02g2427 663 Gene3D Phosphorylase Kinase; domain 1 313 414 - -
Glsi02g2427 663 ProSitePatterns Protein kinases ATP-binding region signature. 345 367 IPR017441 GO:0005524
Glsi02g2427 663 SMART serkin_6 339 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g2427 663 ProSiteProfiles Protein kinase domain profile. 339 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g2427 663 Pfam Legume lectin domain 33 265 IPR001220 GO:0030246
Glsi02g2427 663 Gene3D Transferase(Phosphotransferase) domain 1 415 624 - -
Glsi02g2427 663 SUPERFAMILY Protein kinase-like (PK-like) 322 639 IPR011009 -
Glsi02g2427 663 CDD lectin_legume_LecRK_Arcelin_ConA 32 264 IPR001220 GO:0030246
Glsi02g2427 663 FunFam Probable L-type lectin-domain containing receptor kinase S.5 31 272 - -
Glsi02g2427 663 SUPERFAMILY Concanavalin A-like lectins/glucanases 30 264 IPR013320 -
Glsi02g2427 663 CDD STKc_IRAK 345 621 - -
Glsi02g2427 663 Pfam Protein kinase domain 342 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g2427 663 FunFam Probable L-type lectin-domain containing receptor kinase S.5 324 414 - -
Glsi02g2427 663 FunFam probable L-type lectin-domain containing receptor kinase S.5 415 625 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2427 Glsi-ChrGlsi02 74372502 74374493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2427 75 635 Receptor kinase-like Gene Family AT5G55830 37.252 7.81e-121 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Glsi02g2427 Pkinase 3.6e-52 CL0016