Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2422 ATGGTCAAGGCTGGATTTGCCGGAGATGATGCTCCAAGGGCCGTATTCCCTAGCATTGTGGGTCGCCCTCGCCACACTGGTGTGATGGTTGGTATGGGACAAAAGGATGCCTATGTTGGGGATGAAGCTCAATCAAAGAGAGGTATTTTAACTCTGAAATACCCGATCGAGCATGGCATTGTTAGCAACTGGGATGATATGGAGAAGATCTGGCACCACACTTTCTACAATGAGCTCCGTGTAGCTCCTGAAGAACATCCAGTTCTTCTGACAGAAGCACCTCTCAACCCGAAGGCCAACCGTGAGAAAATGACTCAGATTATGTTCGAGACCTTTAATACTCCCGCTATGTACGTAGCCATCCAGGCCGTCCTTTCCCTTTATGCTAGTGGCCGCACAACTGGTATTGTTCTGGACTCTGGAGATGGGGTCAGTCACACAGTTCCCATCTATGAAGGCTATGCCCTCCCACATGCAATCCTCCGTTTGGACCTTGCAGGGCGTGATCTCACCGATGCCCTGATGAAAATCTTGACTGAGCGTGGATACTCTTTCACCACAACTGCTGAGCGTGAAATTGTGAGAGACATGAAGGAAAAGCTAGCCTATATTGCTCTTGATTATGAACAAGAGCTAGAAACAGCAAAGACCAGCTCAGCTGTTGAGAAGAGCTATGAGCTTCCAGATGGGCAGGTGATCACAATAGGTGCTGAGAGATTCCGCTGCCCTGAAGTACTCTTCCAGCCATCCATGATTGGGATGGAAGCTGCTGGCATTCATGAAACAACATACAACTCTATCATGAAGTGCGATGTTGATATTAGGAAGGATCTCTATGGTAACATTGTCTTGAGTGGTGGTTCCACAATGTTCCCAGGCATTGCTGATAGGATGAGCAAGGAGATTACAGCATTGGCACCAAGTAGCATGAAAATTAAAGTGGTGGCACCACCAGAAAGGAAATACAGTGTCTGGATTGGAGGCTCCATTTTGGCATCCCTCAGCACATTCCAACAGATGTGGATTGCAAAGGCAGAGTATGATGAATCTGGGCCATCAATCGTTCACAGGAAATGCTTCTGA 1083 0.4765 MVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2422 360 PANTHER ACTIN 5 353 IPR004000 -
Glsi02g2422 360 SUPERFAMILY Actin-like ATPase domain 132 360 IPR043129 -
Glsi02g2422 360 Pfam Actin 2 360 IPR004000 -
Glsi02g2422 360 ProSitePatterns Actins signature 1. 38 48 IPR004001 -
Glsi02g2422 360 FunFam Actin, muscle 165 256 - -
Glsi02g2422 360 FunFam Actin, alpha skeletal muscle 1 162 - -
Glsi02g2422 360 FunFam Major actin 242 323 - -
Glsi02g2422 360 CDD NBD_sugar-kinase_HSP70_actin 59 166 - -
Glsi02g2422 360 ProSitePatterns Actins and actin-related proteins signature. 89 101 IPR020902 -
Glsi02g2422 360 Gene3D Actin; Chain A, domain 4 165 256 - -
Glsi02g2422 360 Gene3D - 1 354 - -
Glsi02g2422 360 FunFam Putative actin-related protein 5 324 352 - -
Glsi02g2422 360 Gene3D - 123 323 - -
Glsi02g2422 360 SMART actin_3 1 360 IPR004000 -
Glsi02g2422 360 SUPERFAMILY Actin-like ATPase domain 2 138 IPR043129 -
Glsi02g2422 360 ProSitePatterns Actins signature 2. 341 349 IPR004001 -
Glsi02g2422 360 PRINTS Actin signature 34 45 IPR004000 -
Glsi02g2422 360 PRINTS Actin signature 100 113 IPR004000 -
Glsi02g2422 360 PRINTS Actin signature 221 237 IPR004000 -
Glsi02g2422 360 PRINTS Actin signature 11 20 IPR004000 -
Glsi02g2422 360 PRINTS Actin signature 125 144 IPR004000 -
Glsi02g2422 360 PRINTS Actin signature 46 68 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2422 Glsi-ChrGlsi02 74340112 74342013 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2422 1 360 Cytoskeleton Gene Families AT3G12110 97.222 0.0 733