Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2409 ATGTATCATTTTTCCGAGATGCAAAAAAGTCAATGGGTATCAAGTCCAGCAATTCGCAGGGCAGCCAAAGTTGGAGTCGGAGGATCAGTACTGCAATGTTTAGAGCCCATGAATGAAGTCTGCGTGGACTTTCAACAGTTTCATATTCCTGCAGGTTTGTGTTTTGAGTTCCCCAAAAAGACCTTTGATTCCCAGTCTTTATTGTGTCGATCTTCCGGGGATAACTTCACAGATACAAGTACAACCCAACAAGATGGCTCATCCATTGATCAGTTTCGAAACTCCTTTCCAGCGGTTGATGAATCTATCATGTCCAGCAGTGAAGACACCTTTTTGGAAACACTTGACGGACATTTCACACCAGTTGAGAGGCCCCTTCCAATTTCTTCTAATGGAAATCAGTTGGTCATCTATTCTCAGCCAGATAACAACTCTGTTTCAAGGACAGTTGCGACGGTAAAAAAAAGAATAAGATGGACCAAAGATCTACATGAGCAATTTGTCATGGTAGTGAACCGCCTTGGAGGTCCTCAAAAGAGATCTGTAGAAAGACGGGAAACAGATGAAGTCACTGAGCTTCAACTCAAAATCCATAACCAAATTGAGGAGTCACGACAACTGCAGGTTGAAGTCGGGAGGAACACAAAGAAATTTGCTATTGCTAATTCAACAACAGAAGAAGCAGCTCGATCCCTGATCACCAAAAGTTGGAGAATAATGATGCTGGGCAGTTTGTGTTTTCAGTTCCTCAAAAAGGCATTTGATTCACAGTTTCTATTGGGTCAATCTTCTGGGGATAACCTCACAGATACAAATACAACCCAACAAAATGGCTCAACCGCTCATTTTTTAAACTCCTTTCCAAAGGTTGATGAATCTATCATGTCCAGTAGGAGTGGAGAAGGGCGAAACCAGAAAGAAGAAATGGACGATTTGAAAAAGAGAAAGCTAGAAGAGGACGGCAACGGCGATGTTTCTTCAAAAGAAGAGCTTCGCTTCCTACTTGACCCGCTGGCAAAACCCCAGCTTGTTGATCTTCTCTCTAAACTAGGGTCCCAATATCCTTCAATTGCTGAAGAAATAAAAAGTATTGCAAGTGCTGATCCTGTCCATCGAAAGCTTTTTGTTCGTGGCTTGGCCTGGAATACCACTTCAGAAACGTTGTGTGCTGCATTTCAAGAGCATGGAGAAATTGAGGAAGGGGCTGTGATCTATGATAAAACGACGGGAAAATCACGTGGCTATGGTTTCATAACTTTCAAACATATGGAATCAACTCATCAGGCATTAAGAGCTACTAGCAAGTTAATTGATGGCAGAATGGCTGTCTGTAATCTAGCTTGTGAGGGCCTAAGCGGAGCAAGTAATGCCCCTGATCTTTCCCTGAGGAAGCTGTACATCGGAAGCTTATCACCAGAAGTCACTAGTGAAATATTGCTTAGCTTTTTTGGGAGGCATGGTGAAATAGAGGAAGGCTCAGTTGCATATGACAAAGATACAAATGAATCCCGAGGTTTTGGCTTTGTTACATACAAGACAGCTGAGGCTGCAAAGAAGGCCATAGATGATCCAGAAAAGACTCTTGGGGGAAGGAATATAATTGTAAAATATGCTGATTCTCACAAGGGTAAAACGGGACAGCCACCATTACCTGCAGGAGTGGTTCCAATGACAGCATTACCTATGGCCCCTGGATATGTGCAGCCTGGAAAAACACACATTGGCGCTGCCCCCATTGGTTACGGTCACCCTCAAACTGTAGCATCATATCCTGCATCTTCTTATCCAAGTCCTCCTACTGCAGCCGCTCCTTATCCAACACAAGGGCAAGTTTCTTATCCTCCAGTTTCTGCGTTTCCAACTCCGCCTGTGGGAATGAGCAACTACCCATACTACTATCCCAAGCAATAA 1911 0.4354 MYHFSEMQKSQWVSSPAIRRAAKVGVGGSVLQCLEPMNEVCVDFQQFHIPAGLCFEFPKKTFDSQSLLCRSSGDNFTDTSTTQQDGSSIDQFRNSFPAVDESIMSSSEDTFLETLDGHFTPVERPLPISSNGNQLVIYSQPDNNSVSRTVATVKKRIRWTKDLHEQFVMVVNRLGGPQKRSVERRETDEVTELQLKIHNQIEESRQLQVEVGRNTKKFAIANSTTEEAARSLITKSWRIMMLGSLCFQFLKKAFDSQFLLGQSSGDNLTDTNTTQQNGSTAHFLNSFPKVDESIMSSRSGEGRNQKEEMDDLKKRKLEEDGNGDVSSKEELRFLLDPLAKPQLVDLLSKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTTSETLCAAFQEHGEIEEGAVIYDKTTGKSRGYGFITFKHMESTHQALRATSKLIDGRMAVCNLACEGLSGASNAPDLSLRKLYIGSLSPEVTSEILLSFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTAEAAKKAIDDPEKTLGGRNIIVKYADSHKGKTGQPPLPAGVVPMTALPMAPGYVQPGKTHIGAAPIGYGHPQTVASYPASSYPSPPTAAAPYPTQGQVSYPPVSAFPTPPVGMSNYPYYYPKQ 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2409 636 Gene3D - 450 548 IPR012677 -
Glsi02g2409 636 Coils Coil 190 210 - -
Glsi02g2409 636 CDD RRM2_NsCP33_like 464 538 - -
Glsi02g2409 636 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 272 440 - -
Glsi02g2409 636 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 372 449 IPR000504 GO:0003723
Glsi02g2409 636 MobiDBLite consensus disorder prediction 301 323 - -
Glsi02g2409 636 MobiDBLite consensus disorder prediction 294 323 - -
Glsi02g2409 636 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 463 540 IPR000504 GO:0003723
Glsi02g2409 636 FunFam UBP1-associated protein 2C 450 548 - -
Glsi02g2409 636 Gene3D - 289 449 IPR012677 -
Glsi02g2409 636 Gene3D - 153 210 - -
Glsi02g2409 636 FunFam UBP1-associated protein 2C-like 368 449 - -
Glsi02g2409 636 SUPERFAMILY RNA-binding domain, RBD 361 449 IPR035979 GO:0003676
Glsi02g2409 636 SUPERFAMILY RNA-binding domain, RBD 458 550 IPR035979 GO:0003676
Glsi02g2409 636 SMART rrm1_1 464 536 IPR000504 GO:0003723
Glsi02g2409 636 SMART rrm1_1 373 445 IPR000504 GO:0003723
Glsi02g2409 636 NCBIfam myb-like DNA-binding domain, SHAQKYF class 154 200 IPR006447 GO:0003677
Glsi02g2409 636 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 465 533 IPR000504 GO:0003723
Glsi02g2409 636 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 374 439 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2409 Glsi-ChrGlsi02 74240144 74249814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2409 459 574 C2H2 Transcription Factor Family AT2G19380 33.333 4.37e-14 73.6