Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2400 ATGGGGTTTTCGAGAGGTATTGGCGGAGTACAAGAAGAAGAGCAAGAGTTGACAAAGCTTTTAGGTTCCTCTCTCATGGCTTACAGTGTTAAGACCACCAACCAAACAACCACTCAACTGGAACCACTCCCCCTCGCACCACCTCCACATCGTCATCATCATCACCATCTTCATCTTTATCCCCAACAGCAACAAGACCACCGAATCTCTTTTGGAGCGATGCAATCTTCTCCGTCCTCCTCTATCCCCGGCAACTACCTAAGCAAGGATTCCGGGGCTTATGATTTGGGTGAATTGGATCAAGCCCTTCTTCTCTATCTTGATGGACAAGCAGACCCCTCCAATGTTCAAGACCAAAGACCAGAAAACTCATCATCAGGAATGAGGCCTCCCACTCTAAACATTTTCCCATCTCAGCCTATGCACGTAGAGCCACCATTATCTAAGGCTAGCATGGAATTAGTTTCCCCGCAAACCAGTGGTTCCAAGAGACCTTCAGAGCCGTCTATGGAGTTGGCCAACCCACGAAACGAAGCTGCCTCTGCGCCTGAATCTGCCAAAGCTGTCAAGCGAGAGAGCAATCGCAAGGGTCCAACGTCAAGTTCTGAACAGGAAGGACCCAAAACACCAGATCCTAAGACCCTCAGAAGACTTGCTCAGAATAGAGAGGCAGCTAGGAAAAGCAGGCTTAGGAAAAAGGCATATGTGCAGCAGCTAGAGTCAAGTAGGATCAGGCTTAATCAGCTGGAACAAGAGTTGCAGCGTGCTAGAGCTCAAGGCATATTCTTTGGAGGAGGTGCACTTTTGGGAGGAGAGCAAGGCCTTCCTGTCTCTATGGGTAGCATTAGCTCAGAAGCTGCGATGTTCGACGTAGAATATGCGAGATGGGTGGAGGAGCACCATCGGCTAGTGTGCGAGCTAAGAGCTGCAGTTCAAGAGCACCTGGCTGAGAACGAGCTTCGGCTTTTTGTTGACAATTGCCTTGCTCATTATGACCAAGTAATGAACCTCAAGAGCATTGTGGCAAAAACAGACGTATTCCACCTTGTTTCTGGCCTGTGGAAGACCCCAGCTGAACGTTGCTTCATGTGGATCGGTGGATTCAGGCCCTCCGAACTCATTAAGATTATTTTAAATCAAATAGAGCCCCTGACTGAGCAACAAATACTGGGTATCTGTGGGTTGCAACAATCTACACAGGAGGCAGAAGATGCTCTGTCTCAAGGGCTTGAAGCTCTGAATCAATCTCTGTCGGACACCATAACTTCAGACTCTTTGAGTTGTCCCCCCAATATGACTAACTACATGGGACAGATGGCCGTGGCCATGAACAAGCTCTCCACTCTTGAAGGTTTCGTGAGACAGGCAGATAACCTGAGGCACCAGACCATTCACCGTCTGCATCAGATCCTAACGACCCGTCAAGCAGCAAGGTGTTTGCTGGCCATAGCCGAGTACTCCCATCGTCTGCGAGCCCTGAGCTCTCTATGGCTCGCACGCCCTCGCCAAGAATAA 1515 0.495 MGFSRGIGGVQEEEQELTKLLGSSLMAYSVKTTNQTTTQLEPLPLAPPPHRHHHHHLHLYPQQQQDHRISFGAMQSSPSSSIPGNYLSKDSGAYDLGELDQALLLYLDGQADPSNVQDQRPENSSSGMRPPTLNIFPSQPMHVEPPLSKASMELVSPQTSGSKRPSEPSMELANPRNEAASAPESAKAVKRESNRKGPTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIRLNQLEQELQRARAQGIFFGGGALLGGEQGLPVSMGSISSEAAMFDVEYARWVEEHHRLVCELRAAVQEHLAENELRLFVDNCLAHYDQVMNLKSIVAKTDVFHLVSGLWKTPAERCFMWIGGFRPSELIKIILNQIEPLTEQQILGICGLQQSTQEAEDALSQGLEALNQSLSDTITSDSLSCPPNMTNYMGQMAVAMNKLSTLEGFVRQADNLRHQTIHRLHQILTTRQAARCLLAIAEYSHRLRALSSLWLARPRQE 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2400 504 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 216 231 IPR004827 GO:0003700|GO:0006355
Glsi02g2400 504 SMART brlzneu 209 295 IPR004827 GO:0003700|GO:0006355
Glsi02g2400 504 MobiDBLite consensus disorder prediction 152 167 - -
Glsi02g2400 504 Pfam bZIP transcription factor 213 246 IPR004827 GO:0003700|GO:0006355
Glsi02g2400 504 Pfam Seed dormancy control 304 378 IPR025422 GO:0006351|GO:0043565
Glsi02g2400 504 Gene3D - 212 261 - -
Glsi02g2400 504 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 211 255 IPR004827 GO:0003700|GO:0006355
Glsi02g2400 504 CDD bZIP_HBP1b-like 213 262 - -
Glsi02g2400 504 ProSiteProfiles DOG1 domain profile. 286 500 IPR025422 GO:0006351|GO:0043565
Glsi02g2400 504 MobiDBLite consensus disorder prediction 111 216 - -
Glsi02g2400 504 SUPERFAMILY Leucine zipper domain 213 255 IPR046347 GO:0003700|GO:0006355
Glsi02g2400 504 PANTHER TRANSCRIPTION FACTOR TGA9 133 503 - -
Glsi02g2400 504 MobiDBLite consensus disorder prediction 112 133 - -
Glsi02g2400 504 Coils Coil 232 259 - -
Glsi02g2400 504 FunFam BZIP family transcription factor 212 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2400 Glsi-ChrGlsi02 74184748 74190293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2400 84 504 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 66.366 0.0 569
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Glsi02g2400 DOG1 1.6e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2400 02 74184748 74190293 Glsi11g1301 11 8171283 8174925 CCT