Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2390 ATGGATTCCAGTTCCCATCTCAATTATCAACAACAACATCACCCCAATTCTGGGTTACTTCGGTTTCGCTCGGCCCCAGGTTCACTCCTTGCAAAGTTCACAGAAGCACTTGATTCTGCTGTCGATAAGGGTAATCCATGGGAGAGTTCTGAATCCGACAGATTAATTTCTAGATTCGTAAATAACGACGATACAGACTCGCCTAGTTTACAAGAATTCAAAGACGAAGCACCAAAACCAACCGAGGCAACTCTGAACCTTATGCAATCCCAGCAAGGCTATATTGGTTTACCCCCTCAATATCCAAGGCATAATTCCACTGCAAGTTCCACCATGGATAGTTCTTATGGAATGGTGGGTTCATTAGGAATGGATCACCAAACGCAGTCCAAAAGCTTTAGTTCGAATCTTCTCAGGCAAAGTAGCTCCCCTGCTGGGTTTTTCTCCAACATTTCCCTACAAAATGGGTATGCCCCGATGAAAGGTGTTGAAAACTACGGTGGGGTAAATGGCAGTAGTGGTGAAGTTAGTCCGTCTTTGAGCAGATTGAAGAATCAGATTAACTTCTCGTCAAGAAGTGCATCTTCCCTGGGAATATTGTCACAAATCTCTGAAATCGAGAGTGAGAGCATTGGAGCAACTAGCCCTGATGATGGGAGGCTGGGATGTAGCAATGGTTATGGCCCTGGATTTCCATATGGTTCCTGGAATGACACGTTGCATCTCTCGGAAAATCTCAGTGGCTTGAAAAGAAAGCAAAGTAATAATGAAAAGTTATATTCTGATGCGCAGAATGGACAGTTAGGAAATCGGGTTCATACTCTCTCGCATCACTTGAGTTTGCCAAAACCTTCAGCAGATACGGCAGCTATGGAGAGGTTCCTTCAATTCCCAGACGCTGTTCCTTGTAAAATCAGAGCAAAGCGAGGCTGTGCGACTCATCCTCGAAGCATTGCAGAAAGGGTAAGAAGAACTCGGATCAGTGAACGGATGAGAAAATTACAAGAGCTTGTCCCAAACATGGATAAGCAAACAAACACATCAGACATGTTGGACTTGGCGGTTGATTATATAAAAGATCTTCAGAAACAATTCAAGAGTCTGAGTGATAAACGGGCGAGCTGCAAATGTAGAAGCACGCAGAAGGCGGATACAAATCATGCAGTTTGA 1170 0.441 MDSSSHLNYQQQHHPNSGLLRFRSAPGSLLAKFTEALDSAVDKGNPWESSESDRLISRFVNNDDTDSPSLQEFKDEAPKPTEATLNLMQSQQGYIGLPPQYPRHNSTASSTMDSSYGMVGSLGMDHQTQSKSFSSNLLRQSSSPAGFFSNISLQNGYAPMKGVENYGGVNGSSGEVSPSLSRLKNQINFSSRSASSLGILSQISEIESESIGATSPDDGRLGCSNGYGPGFPYGSWNDTLHLSENLSGLKRKQSNNEKLYSDAQNGQLGNRVHTLSHHLSLPKPSADTAAMERFLQFPDAVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKDLQKQFKSLSDKRASCKCRSTQKADTNHAV 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2390 389 MobiDBLite consensus disorder prediction 1 21 - -
Glsi02g2390 389 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 314 378 IPR036638 GO:0046983
Glsi02g2390 389 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 311 361 IPR011598 GO:0046983
Glsi02g2390 389 MobiDBLite consensus disorder prediction 59 78 - -
Glsi02g2390 389 Pfam Helix-loop-helix DNA-binding domain 316 362 IPR011598 GO:0046983
Glsi02g2390 389 Gene3D - 312 386 IPR036638 GO:0046983
Glsi02g2390 389 MobiDBLite consensus disorder prediction 1 18 - -
Glsi02g2390 389 FunFam Transcription factor bHLH130 family 312 381 - -
Glsi02g2390 389 SMART finulus 317 367 IPR011598 GO:0046983
Glsi02g2390 389 Coils Coil 358 378 - -
Glsi02g2390 389 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 26 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2390 Glsi-ChrGlsi02 74129826 74131979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2390 1 366 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 49.105 1.06e-98 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi02g2390 HLH 7.7e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2390 02 74129826 74131979 Glsi02g2390 02 74129826 74131979 ECH