Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2389 ATGCTTCTCCCTCTGCACTTTGCTTCTTTTCTCATATGCTTCTTTGCTCCTTTCACCACCTCTCTGAACTCCGATGGCCTCTCTCTCCTCGCCCTCAAAGCCGCCATTGAGTCCGACCCTTCTGGCGTTCTCAACTCTTGGTCTGACTCTGACTCCACCCCCTGTCGCTGGGCTGGTGTCATCTGTGCGCACGATCGAGTTACCCAACTCATCCTTAACAACAAAGGCCTAACTGGCTACATTCCCTCTGAACTCGGTTTGCTCAACTCTCTCAAGCAACTCAGTCTTTCTCAAAACAACTTCTCCAAAGTCATTCCTTCCCGTCTCTTCAACGCAACCGGTCTAGTCGTTCTAGACCTCTCGCACAATTCCCTCTCTGGTCCAATCCCAACAGAAATCAAGTCTCTCAAATCTCTCAGACATTTGGATTTATCCTCAAATTCACTCAATGGGTCTCTCCCTGAAGCTCTCTCCGAGCTCATTGACCTCGTCGGAACCTTGAATCTCTCTTACAATCACTTCTCCGGTGGGATCCCAGAGTCTTTCGGTAGACTCCCTGTGATAGTCAGTTTGGATCTCCAGAACAACAATCTGACAGGTAAAATCCCTCAAGTAGGTTCGTTGCTAAACCAGGGCCCGACAGCTTTCTCTGGTAACCCCGGGCTCTGTGGGTTTCCTTTGCAGAATGCATGCCCAGAAGCTCAAAAGCCCGAGATTTTTACAAGCACTGAAGACCCTCAAAACCCCAAAACCCTTAACCCTGGCTTCCCAATGGGACTTCAAGAGAAGAAGGCGAAAGGGCGTGGTGGGTCCGTCATTTTCCCTATAATTTCCGGCGTGTCGTTGGTGGTAGGGGCTGTTTCGTTGTCAGTGTGGCTGTTCCGTAGAAGATGGACGACTGATGAGAGCAACCTGGGAAAACAAAAATTAGAGAATGAGGTTGACAAGGAAGGAGATGAGCAGAAGGGTAAATTCGTGATCGTTGATGAAGGGTTTAATTTGGAGTTAGAGGATTTATTAAGGGCATCAGCGTACGTGGTGGGGAAGAGCAGGAGTGGGATTGTGTATAAGGTGGTGGCTGTCGGAAAGGGATCGTGCCCGCCAGCGACGGTGGTTGCTGTCCGGCGGTTGAGTGAGGGTGATGCCACATTGAAGCTCAAGGAGTTCGAGTCCGAGGTGGAGACCATTGGGAGGGTCCACCACCCCAATATCGTCCGGTTGAGAGCATATTACTATGCGCATGATGAAAAATTACTCATCACTGATTTCATCCGCAATGGAAGCTTGCACACTGCACTCCATGGTGAACCTTCCAATGGTTTGCCACCATTATCATGGGCAGTGAGGTTAAGAATCGCTCAAGGAGTTGCAAGGGGTTTAATGTACATACACGAGTTCAATGGTCGGAAATATGTCCATGGCAACCTTAAATCAACAAAAATCTTGCTGGATGATGATCTCCATCCTTACATATCTGGTTTTGGACTTACTAGATTTGGTTTGAGTACTTCAAAGTGTACTTCATTGTTACCAAGACGGCAGAATTCAAAACAGTCTGTTGTAACCTCTGCAGTGGCTTCAAGCGTAGCAGCTCCCCATAACAATTACTTGGCACCTGAGGTGCGCATGACAGGGGGCAAATCTACTCAGAAATGTGATGTGTATTCTTTTGGCATAGTGCTTTTAGAATTATTGACAGGTCGGCTGCCAGATTTAGGACCAGAAAATGATGGTGAAGGACTAGAGAGTTTTGTGAGGAAAGCATTTAGGGAGGAACAGCCCTTGTGTGAGATTATAGACCCAACGCTTCTGTCTGAGGTTTATGCTAAAAAGCAAGTTGTTGCAGCATTTCATATAGCACTGAATTGCACAGAACTTGACCCAGAGTTGCGACCTAGAATGAGAACTGTGTCAGAGAGCCTTGATCGCATCAAAATACAATGA 1944 0.4753 MLLPLHFASFLICFFAPFTTSLNSDGLSLLALKAAIESDPSGVLNSWSDSDSTPCRWAGVICAHDRVTQLILNNKGLTGYIPSELGLLNSLKQLSLSQNNFSKVIPSRLFNATGLVVLDLSHNSLSGPIPTEIKSLKSLRHLDLSSNSLNGSLPEALSELIDLVGTLNLSYNHFSGGIPESFGRLPVIVSLDLQNNNLTGKIPQVGSLLNQGPTAFSGNPGLCGFPLQNACPEAQKPEIFTSTEDPQNPKTLNPGFPMGLQEKKAKGRGGSVIFPIISGVSLVVGAVSLSVWLFRRRWTTDESNLGKQKLENEVDKEGDEQKGKFVIVDEGFNLELEDLLRASAYVVGKSRSGIVYKVVAVGKGSCPPATVVAVRRLSEGDATLKLKEFESEVETIGRVHHPNIVRLRAYYYAHDEKLLITDFIRNGSLHTALHGEPSNGLPPLSWAVRLRIAQGVARGLMYIHEFNGRKYVHGNLKSTKILLDDDLHPYISGFGLTRFGLSTSKCTSLLPRRQNSKQSVVTSAVASSVAAPHNNYLAPEVRMTGGKSTQKCDVYSFGIVLLELLTGRLPDLGPENDGEGLESFVRKAFREEQPLCEIIDPTLLSEVYAKKQVVAAFHIALNCTELDPELRPRMRTVSESLDRIKIQ 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2389 647 Pfam Protein tyrosine and serine/threonine kinase 347 641 IPR001245 GO:0004672|GO:0006468
Glsi02g2389 647 ProSiteProfiles Protein kinase domain profile. 341 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g2389 647 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 10 645 IPR046959 -
Glsi02g2389 647 SUPERFAMILY L domain-like 24 228 - -
Glsi02g2389 647 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Glsi02g2389 647 SUPERFAMILY Protein kinase-like (PK-like) 346 641 IPR011009 -
Glsi02g2389 647 FunFam Leucine-rich repeat receptor-like protein kinase 138 233 - -
Glsi02g2389 647 PRINTS Leucine-rich repeat signature 136 149 - -
Glsi02g2389 647 PRINTS Leucine-rich repeat signature 115 128 - -
Glsi02g2389 647 Gene3D Phosphorylase Kinase; domain 1 309 423 - -
Glsi02g2389 647 FunFam Leucine-rich repeat receptor-like kinase 27 132 - -
Glsi02g2389 647 SMART LRR_typ_2 88 112 IPR003591 -
Glsi02g2389 647 SMART LRR_typ_2 136 160 IPR003591 -
Glsi02g2389 647 Gene3D Ribonuclease Inhibitor 22 164 IPR032675 -
Glsi02g2389 647 Gene3D Ribonuclease Inhibitor 165 233 IPR032675 -
Glsi02g2389 647 Gene3D Transferase(Phosphotransferase) domain 1 424 647 - -
Glsi02g2389 647 Pfam Leucine rich repeat 90 149 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2389 Glsi-ChrGlsi02 74125887 74128975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2389 22 645 Receptor kinase-like Gene Family AT3G57830 62.598 0.0 764
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Glsi02g2389 PK_Tyr_Ser-Thr 2e-26 CL0016