Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2385 ATGGCTACATTCTGTATATACCTATTTCTTCTTTCTTTAACCTCTACAGTTCTCAATCTTGCTTCGTCTTCTTCAGAAGCCAATATCCTTCTCTCCTTCAAGGCCTCCATCCTAGACTCTAAGAAGGCTCTGTCAAGCTGGTCCAATACTTCAGCCACCCACTACTGTAACTGGACTGGGATCGCCTGCTCCACCACGCCTTCAATCTCTGTTACTTCTATTCATCTGCAAAGCTTAAACCTTTCTGGGGATATCTCTTCTGCAATATGTGACCTCCCAAATCTTTTTCACCTCAATCTTGCTGACAATCTATTCAACCAGCCCATCCCTCTTCATTTATCTCAGTGCACTTCGTTGCAAACTTTGAATCTCAGTAACAATCTCATCTGGGGCACCATCCCATCTCAGATTTCTCAGTTTGGTTCCTTGACAGTGCTTGATTTTAGCAGAAACCACATAGAAGGAAGCATCCCAGAAACCTTAGGCTCCTTGAAGAACCTCCAAGCCCTCAACGTGGGAAGCAACTTGCTATCTGGCAGTGTACCTACTATCTTTGGGAATTTCACTAAGCTTGCTGTTCTTGATCTGTCGCAAAATCCGTACTTGGTGAGTGAGATTCCGAAGGATATTGGCCAACTTGGAAATCTCAAACAACTTCAGCTGCAGAGATCTAATTTTCAAGGTGAGATTCCAGATTCTTTTGCGGGCCTGCGTATTTTGACCCATTTAGACCTCTCTGAGAACAATCTGACGGGTAAGGTTCCTCAAGCTGTGGTGTCCTCTCTAAAGAACCTGGTCTCTTTTGATGTTTCACAGAATAAACTTTTGGGGCAATTTCCGAATGGGATTTGTACGGGACAAGGCCTTATTAATCTCAGTCTCCACACGAATCTCTTCACCGGTCCAATACCAATCTCCGTTAATGAATGTAAGAATATTGAGAGATTCCAAGTTCAGAACAACGGATTTTCTGGAGATTTCCCAAGCGCATTATGGTCATTACCGAAAATTAAGCTCATTCGAGCTGAAAACAATAAATTCTCAGGACAAATACCGGAGTCGATATCAGGAGCTTTTCAGTTGGAACAAGTTCAGATTGACAATAATATCTTTGCCGGTAAAATTCCTCAGAGTCTTGGGTTGGTAAAGGGCTTATACAGATTCTCTGCTTCTCTAAATAGTTTCTATGGTGAACTTCCACCAAATTTTTGCGATTCTCCTGTTTTAAGTATTGTAAATCTCTCCCACAATTCCCTTTCTGGTCAAATCCCAGAGCTGAAAAAATGCCATAAACTAGTTTCGTTGTCTTTGGCAGACAACAGTCTTACTGGAGTAATACCTCCTTCCCTTGCTGAGTTACCAGTTCTGACTTACCTTGATCTTTCAGATAACAATCTCACTGGTTCAATCCCTCAAGGGCTTCAAAACTTGAAGCTTGCTCTGTTCAATGTGTCCTTCAATCAGCTATCTGGTAAAGTACCATATTCCTTGATTTCTGATCTCCCTGCCTCATATTTGGAAGGAAACCCTGAACTTTGTGGCCCTGGGTTACCTACTTCCTGTTCTGATGATCCACCAAGAAATCACACCGGTGGTCTTACAACTTTGACATATGCCCTGCTCTCTGTAGCCTTTTTGGTTGGAACTGCCATCCTCGCTGGTGGATTTATAATGTACAAGAAGTCTTGCAAGCAGAATCAAATTGGGGTTTGGCGCTCAGTGTTCTTCTATCCTCTTAGAATTACTGAGAATGATCTGCTTATGGGGATGGATGGAAAAAGCTTGATGGGAAATGGTGGGGTTTTTGGTAATGTTTATGTTGTGAGTTTACCAACTGGAGAACAAGTTGCTGTAAAGAGGCTAGTCAATTTTGGGAATCAATCTTCAAAAAAGTTGAAAGCTGAGGTCAAGACATTGGCAAAAATCAGGCATAAGAATATCGTTAAAATTCTGGGTTTCTGCCATTCTGATGAGTCAATCCTTGTCATTTACGAGTATTTGCATGAAGGAAGCTTAGGGGATTTGATTTCCCGTCAGAATTTTCAGTTGCAGTGGGGTGTTAGATTGAGGATTGCCATTGGGATTGCACAAGCATTGGCATATCTTCACAAGGATTACGTTCCGCACTTGCTTCACAGAAATGTCAAGTCAAAGAACATTCTGCTGGATGCAAACTTGGAGCCCAAACTCACAGATTTTGCCCTCGATCGAATTGTGGGAGAAACCGCATTTCAGTCAATTGTTGCTTCTGAAGCAGCATCTTCGTGTTATAAGGCTCCAGAATATGGTTACAGTAAGAAAGCAACAGAAAAGTTGGACGTGTACAGTTTTGGTGTTGTTCTGCTAGAGCTAGTGACTGGCAGGGAAGCAGAGGAAAGAGAGTCAACGGAGTCTCTTGACATAGTGAAGTGGGTTAGAAGGAAAGTGAACATCAGTAATGGAGCACTTCAAGTTCTTGATCCTAACATCTCCCATTGTTGTCAGCAGGAAGAAATGATAGGTGCTCTGGAAATCGCTCTTCGCTGCACTTCAGTGGTGCCTGAAAAAAGGCCATCTATGGTGGAAGTTGTTAGAGCTCTTCAGTCACTCGAGTCAAAGACTGCTGAACTTCAAAATGATCAGGAACACTCGGCTGAGGCTTCAATCTGA 2649 0.4258 MATFCIYLFLLSLTSTVLNLASSSSEANILLSFKASILDSKKALSSWSNTSATHYCNWTGIACSTTPSISVTSIHLQSLNLSGDISSAICDLPNLFHLNLADNLFNQPIPLHLSQCTSLQTLNLSNNLIWGTIPSQISQFGSLTVLDFSRNHIEGSIPETLGSLKNLQALNVGSNLLSGSVPTIFGNFTKLAVLDLSQNPYLVSEIPKDIGQLGNLKQLQLQRSNFQGEIPDSFAGLRILTHLDLSENNLTGKVPQAVVSSLKNLVSFDVSQNKLLGQFPNGICTGQGLINLSLHTNLFTGPIPISVNECKNIERFQVQNNGFSGDFPSALWSLPKIKLIRAENNKFSGQIPESISGAFQLEQVQIDNNIFAGKIPQSLGLVKGLYRFSASLNSFYGELPPNFCDSPVLSIVNLSHNSLSGQIPELKKCHKLVSLSLADNSLTGVIPPSLAELPVLTYLDLSDNNLTGSIPQGLQNLKLALFNVSFNQLSGKVPYSLISDLPASYLEGNPELCGPGLPTSCSDDPPRNHTGGLTTLTYALLSVAFLVGTAILAGGFIMYKKSCKQNQIGVWRSVFFYPLRITENDLLMGMDGKSLMGNGGVFGNVYVVSLPTGEQVAVKRLVNFGNQSSKKLKAEVKTLAKIRHKNIVKILGFCHSDESILVIYEYLHEGSLGDLISRQNFQLQWGVRLRIAIGIAQALAYLHKDYVPHLLHRNVKSKNILLDANLEPKLTDFALDRIVGETAFQSIVASEAASSCYKAPEYGYSKKATEKLDVYSFGVVLLELVTGREAEERESTESLDIVKWVRRKVNISNGALQVLDPNISHCCQQEEMIGALEIALRCTSVVPEKRPSMVEVVRALQSLESKTAELQNDQEHSAEASI 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2385 882 SUPERFAMILY L domain-like 202 519 - -
Glsi02g2385 882 ProSiteProfiles Protein kinase domain profile. 591 863 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g2385 882 Gene3D Ribonuclease Inhibitor 182 287 IPR032675 -
Glsi02g2385 882 FunFam Leucine-rich repeat family protein 25 182 - -
Glsi02g2385 882 CDD STKc_IRAK 596 863 - -
Glsi02g2385 882 Pfam Protein kinase domain 596 858 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g2385 882 Pfam Leucine rich repeat 118 177 IPR001611 GO:0005515
Glsi02g2385 882 Pfam Leucine rich repeat 431 489 IPR001611 GO:0005515
Glsi02g2385 882 Pfam Leucine rich repeat 215 275 IPR001611 GO:0005515
Glsi02g2385 882 SUPERFAMILY L domain-like 24 303 - -
Glsi02g2385 882 SUPERFAMILY Protein kinase-like (PK-like) 600 864 IPR011009 -
Glsi02g2385 882 Gene3D Ribonuclease Inhibitor 23 181 IPR032675 -
Glsi02g2385 882 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 261 524 - -
Glsi02g2385 882 SMART LRR_typ_2 262 286 IPR003591 -
Glsi02g2385 882 SMART LRR_typ_2 117 140 IPR003591 -
Glsi02g2385 882 SMART LRR_typ_2 92 116 IPR003591 -
Glsi02g2385 882 SMART LRR_typ_2 164 187 IPR003591 -
Glsi02g2385 882 SMART LRR_typ_2 237 261 IPR003591 -
Glsi02g2385 882 SMART LRR_typ_2 188 213 IPR003591 -
Glsi02g2385 882 SMART LRR_typ_2 453 476 IPR003591 -
Glsi02g2385 882 Coils Coil 853 873 - -
Glsi02g2385 882 PRINTS Leucine-rich repeat signature 240 253 - -
Glsi02g2385 882 PRINTS Leucine-rich repeat signature 453 466 - -
Glsi02g2385 882 Gene3D Transferase(Phosphotransferase) domain 1 668 881 - -
Glsi02g2385 882 FunFam probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 581 666 - -
Glsi02g2385 882 Gene3D Ribonuclease Inhibitor 288 521 IPR032675 -
Glsi02g2385 882 ProSiteProfiles Leucine-rich repeat profile. 455 478 IPR001611 GO:0005515
Glsi02g2385 882 Pfam Leucine rich repeat N-terminal domain 24 64 IPR013210 -
Glsi02g2385 882 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 9 862 - -
Glsi02g2385 882 Gene3D Phosphorylase Kinase; domain 1 596 667 - -
Glsi02g2385 882 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 667 868 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2385 Glsi-ChrGlsi02 74101785 74104655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2385 30 863 Receptor kinase-like Gene Family AT5G06940 62.768 0.0 1043
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Glsi02g2385 Pkinase 3.6e-39 CL0016