Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2382 ATGTTTGAGGCGTTGAGCTATAATCATGTTCCAGGGCCAGTTATACTTTGTGAGCTTGCCATGGAGACCGATAATGGTGACACCAAGTCAAAAATGGAAGATTACGAAGTGATAGAGCAAATTGGCAGAGGAGCATTCGGCGCCGCCTTTCTCGTTCTCCACAAGTCTGAAAAAAAGAAGTATGTGCTGAAGAAGATTCGCTTGGCCAAACAAACCGAGAAGTTCAAACGTACCGCGCACCAAGAGATGGACCTGATTGCAAAACTAAATAACCCCTATATCGTGGAGTACAAAGATGCTTGGGTGGAAAAGGGAGACTACATATGTATAATAATTGGCTATTGTGAAGGAGGTGACATGGCTGAGATCATAAAGAGGGCCAGAGGATCCTTTTTTCCAGAGGAGAAGATCTGCAAATGGCTGACTCAGTTATTGCTGGCTGTGGACTACCTGCACTCTAATCGTGTACTCCACAGAGATCTTAAATGTTCCAATATATTCCTCACCAAAGACAATGACATTCGGCTTGGTGACTTTGGTCTTGCAAAGCTACTAAACACAGAAGACCTTGCTTCCTCGGTTGTTGGAACTCCAAACTACATGTGTCCTGAGCTCCTTGCTGATATACCTTATGGTTATAAATCTGATATATGGTCACTTGGTTGTTGCATGTTTGAAATTGCTGCTCATCAACCAGCATTTCGTGCTCCAGACATGGCTGGACTTATCAACAAAATAAATAGATCCTCCATTTCTCCACTGCCAATTGTTTATTCTTCTACTCTGAAACAAATTATCAAGAGCATGCTGAGGAAGAACCCAGAAAATAGACCACCAGCAGCGGAATTGTTAAGGCATCCTCATTTACAACCATTTGTTCTTCGCTGTCGTAATCCATCATCTGTCTTTCTTCCTGTAAAACCTATAAGTAACTCAAAGGATAAAATGAAAAGATCTCATAAATCTAATGGTGGAAAGGACCATAGGGATAAAGAAGTGGGATTTACAAATCGTTTGGAGCGGATTCATCCATTTGAGGGAAATGGAGAAGTACTTCCAAGCAGTCTTCCTAATGATGGTGAGCGAACAGTCTCGACCAGTGTAGAAGAGAACCTTGAGACCAAGATGGTAGATCCCATCAGCTACACAGTGGAATCATCTACTAGTATCAGTGGCTCAAAAGATGGGTCTACAACATCTGAATCAACTGTTGGCAGTGTGTTCAAGGAAGCAGAGTTTAAAAATAGACGTGCTGGGAAAACAGCTGATAATGAAATTACCTCAAAGACAATTCCAGGTTATAAGCATGAAGAACAAGGATTGGATGCTGAACAATTTCAAAAATCAGAAGGGGTTGACATAAATGCAGTGACCACAAAAGTTGAAGATGCTTTTTTCAATGATGATTTCAATAAAGCCAAGGTACAGAGGGAAGATACCAAACCTGAGGATTCCAAGAAATCAATAGCGTCCAGTGCAGGCAGCACTGATAAAGATGGGTCCCTTGATGAAGAAAGGTCAACACTAACTATGCAGCCTATTAGGGTCGAACATGACACTGAACCTGGAACCTGCTTAAAGAAAAGGGAAGATACCGATGGTTCTCACAAGGATTGTTTGTCTTCTGAGAGTAATGATACACTTCCAGGTAAAGATGAAGGCCAAGCAAAATCACATAACATCAGTTGCTCCACGCATAAAGAAAATGATAGTGCTTGTGTGGTTGATCAGACACCGAGTGAGCTTTCATTAAGTACACTTACTGCCGTAGGTGGTGATGAAACCAAGAATGTGATGGATAGTCCCTGCCAGCAAAGAGCTGATGCTCTGGAGTCTCTGCTTGAATTATGTGCTCAGTTACTTAAGCAGGACAAACTTGATGAGCTTGCTGGTGTGCTAAAACCATTTGGGGAAGAAGCTGTCTCATCCAGAGAAACAGCAATATGGTTGACAAAGAGCCTCATGTCTGCTCAAAAATTTAATACGGAAACCTAG 1995 0.4195 MFEALSYNHVPGPVILCELAMETDNGDTKSKMEDYEVIEQIGRGAFGAAFLVLHKSEKKKYVLKKIRLAKQTEKFKRTAHQEMDLIAKLNNPYIVEYKDAWVEKGDYICIIIGYCEGGDMAEIIKRARGSFFPEEKICKWLTQLLLAVDYLHSNRVLHRDLKCSNIFLTKDNDIRLGDFGLAKLLNTEDLASSVVGTPNYMCPELLADIPYGYKSDIWSLGCCMFEIAAHQPAFRAPDMAGLINKINRSSISPLPIVYSSTLKQIIKSMLRKNPENRPPAAELLRHPHLQPFVLRCRNPSSVFLPVKPISNSKDKMKRSHKSNGGKDHRDKEVGFTNRLERIHPFEGNGEVLPSSLPNDGERTVSTSVEENLETKMVDPISYTVESSTSISGSKDGSTTSESTVGSVFKEAEFKNRRAGKTADNEITSKTIPGYKHEEQGLDAEQFQKSEGVDINAVTTKVEDAFFNDDFNKAKVQREDTKPEDSKKSIASSAGSTDKDGSLDEERSTLTMQPIRVEHDTEPGTCLKKREDTDGSHKDCLSSESNDTLPGKDEGQAKSHNISCSTHKENDSACVVDQTPSELSLSTLTAVGGDETKNVMDSPCQQRADALESLLELCAQLLKQDKLDELAGVLKPFGEEAVSSRETAIWLTKSLMSAQKFNTET 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2382 664 FunFam serine/threonine-protein kinase Nek6 isoform X2 115 303 - -
Glsi02g2382 664 Pfam Protein kinase domain 35 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g2382 664 Gene3D Transferase(Phosphotransferase) domain 1 115 298 - -
Glsi02g2382 664 ProSitePatterns Protein kinases ATP-binding region signature. 41 64 IPR017441 GO:0005524
Glsi02g2382 664 CDD STKc_Nek 34 289 - -
Glsi02g2382 664 MobiDBLite consensus disorder prediction 380 406 - -
Glsi02g2382 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 156 168 IPR008271 GO:0004672|GO:0006468
Glsi02g2382 664 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 32 615 - -
Glsi02g2382 664 Gene3D Phosphorylase Kinase; domain 1 18 114 - -
Glsi02g2382 664 ProSiteProfiles Protein kinase domain profile. 35 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g2382 664 MobiDBLite consensus disorder prediction 520 540 - -
Glsi02g2382 664 MobiDBLite consensus disorder prediction 475 563 - -
Glsi02g2382 664 MobiDBLite consensus disorder prediction 541 563 - -
Glsi02g2382 664 SMART serkin_6 35 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g2382 664 MobiDBLite consensus disorder prediction 378 440 - -
Glsi02g2382 664 MobiDBLite consensus disorder prediction 307 362 - -
Glsi02g2382 664 FunFam Serine/threonine-protein kinase Nek6 21 114 - -
Glsi02g2382 664 SUPERFAMILY Protein kinase-like (PK-like) 32 319 IPR011009 -
Glsi02g2382 664 MobiDBLite consensus disorder prediction 311 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2382 Glsi-ChrGlsi02 74068424 74073969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2382 29 290 MAP Kinase Kinase Kinase AT3G13530 33.208 2.44e-37 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Glsi02g2382 Pkinase 5.5e-66 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2382 02 74068424 74073969 Glsi11g1322 11 8304691 8309393 CCT
Glsi02g2382 02 74068424 74073969 Glsi02g2382 02 74068424 74073969 ECH