Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2378 ATGGCTGACCCTTACTCTAATTTTTTCTCAGCTGGTTTCTTCCAATTCAATCCCATCGCCAACCATTACCCACCTTCAAACCCTTCTCCGCACCCTCCCTACCATCTCCACAACTTCATCAACCATAACTCTCTCCACTACTACCACCAGCAAAGTAGTATTTGCTCGCCCCCTTCCCCTCCTCTCAGAGAAGCCCTTCCCCTTCTGAGCCTCAGCCCAACTAAGCAAGAAGATCAGGAAGACCAAGAACAGGAGGGCCAGTCCTGCACTGCAGCCATGGATGTACCCAAAGAAGAAGAAGAAGACCATGACAGCGTGACTGTTGCACTCCACATAGGCTTGCCAAGCCCTAGTGCTGCAGAGATGGCCTCTGTGCTCTCTTCTTCCTCTGAGATCACTGATAAAGAACAAGGAGATGCTGAGGATTCTGGGTTTATGCTCAACAAGCTCAACAAAGGCCAGTATTGGATCCCTACCCCTTCTCAGATTCTCATTGGTCCTACACAGTTCTCCTGCCCTGTTTGCTGCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCGCAGTACAGAAAAGGGCCTGAATCTCTGAGGGGTACCCAACCTACAGGCATGCTAAGGCTTCCTTGCTATTGTTGTGCCCCAGGGTGCAGAAATAACATTGATCACCCCAGAGCAAAGCCCCTCAAAGATTTTAGAACCCTTCAAACACATTACAAGAGGAAGCATGGGATTAAGCCGTTCATGTGCAGAAAATGTGGCAAGGCTTTTGCTGTGAGGGGGGATTGGAGAACCCATGAAAAGAACTGTGGGAAGCTTTGGTATTGTATCTGTGGCTCTGATTTCAAGCACAAGAGGTCTCTTAAAGATCATATAAAAGCTTTTGGGAGTGGCCATGCAGCTTATGGGATCGATGGGTTCGAAGAAGAAGATGAGCCAGCATCAGAAGTAGAACAAGATAACGACTTTTTGTTGGGGTGTGCATATGATGCCGCTTTTGCTTTGGATAGTGGAGAAGATGTGTTTGTTGATAGACGGAACATATACCATTTGAGATTCACCGTTGCTTGGAAAATTCAAAGCAAATGA 1107 0.4715 MADPYSNFFSAGFFQFNPIANHYPPSNPSPHPPYHLHNFINHNSLHYYHQQSSICSPPSPPLREALPLLSLSPTKQEDQEDQEQEGQSCTAAMDVPKEEEEDHDSVTVALHIGLPSPSAAEMASVLSSSSEITDKEQGDAEDSGFMLNKLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEDEPASEVEQDNDFLLGCAYDAAFALDSGEDVFVDRRNIYHLRFTVAWKIQSK 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2378 368 ProSitePatterns Zinc finger C2H2 type domain signature. 172 192 IPR013087 -
Glsi02g2378 368 Gene3D Classic Zinc Finger 232 306 - -
Glsi02g2378 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 254 274 IPR013087 -
Glsi02g2378 368 FunFam Zinc finger protein WIP2 223 305 - -
Glsi02g2378 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 170 197 IPR013087 -
Glsi02g2378 368 SMART c2h2final6 254 274 IPR013087 -
Glsi02g2378 368 SMART c2h2final6 170 192 IPR013087 -
Glsi02g2378 368 Gene3D Classic Zinc Finger 169 192 - -
Glsi02g2378 368 MobiDBLite consensus disorder prediction 74 100 - -
Glsi02g2378 368 SUPERFAMILY beta-beta-alpha zinc fingers 236 274 IPR036236 -
Glsi02g2378 368 PANTHER ZINC FINGER PROTEIN WIP2 38 326 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2378 Glsi-ChrGlsi02 74048655 74051785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2378 1 328 C2H2 Transcription Factor Family AT3G57670 63.947 1.10e-146 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi02g2378 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2378 02 74048655 74051785 Glsi11g1324 11 8318119 8326579 CCT
Glsi02g2378 02 74048655 74051785 Glsi02g2378 02 74048655 74051785 ECH