Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2372 ATGCTGCCGCTTCTGTTCGCGGTGGCCTTCTCCACCGTGCCTCTCACTTTGTACGTGCCTCCGATCCGCAGCTTCAACCTCTTCGTACAGACCGTCGAAGACTATCTGCGACAGACCACTGTGTATGCCGTTAGAGCTTATCCTCGCATAAGACTCGCTTTCTCTCGCATCTTCAACTCCATCGTCCGCTTGGCCAGATCACATACTGGAGAAGCATGGGATAAAGGTGAAGAGAGTCTCGGGTATCAGCTTTGTTACTCCTCTCAACGTGACAACATTTATACCAAACACCACTCTTGCTCCCTACAAATCCCGCGCCTTCATCTCCTCTTCAGCAGTTCCCGGTATCCCAAAGAACTGATATCCCACAACCTTGCCTTGTTCGTACATCCCTCCCCAGTATCAACCATGGAAACTTGCAGAAAGTCCCCCTTGAAGCCCTGGAAAAAAGGACCAACCAGGGGGAAAGGTGGCCCTCAGAATGCTTCTTGCGAGTATCGAGGCGTTCGTCAAAGAACTTGGGGAAAATGGGTTGCTGAGATAAGAGAGCCAAAGAAGAGAACCAGGCTCTGGCTTGGTTCTTTTGCCACAGCTGAAGAAGCTGCCATGGCTTATGATGAAGCTGCAAGGAGACTCTATGGACCAGATGCTTACCTTAATCTTCCCCACCTTCAACCCAGCTCCAGTTCTCCTATCAAATCTCAAAAGTTCAAATGGTTGCCTTCCAAGAATTTCATTTCAATGTTTCCTTCTTGTGGATTACTCAATGTTAATGCTCAACCTAGTGTTCACGTAATCCATCAGAGGCTACAACAACTTAAGCAGAATGCTGGGGGTCCAAGTCAAACTCTTTCTAGTTCGCCTTCTGATCCAAAGGACGAACTCCAGATTATAAGCTGCAAGCATGATGCAGAAAATCCTCTGAACGAAAAAGATGCTAAAACATCATCAGAAAATATGCTCGGAGATCTTCAGGAGAAACCCCAGATTGACCTCCATGAGTTTCTTCAACAACTGGGAATATTGAAAGATGAAAAGCAACCAGAAAGAACTGATAGCTCAGGAAGTTCCACAGAGCCTGAATCTTTATCAAGAGCTTACAGTGATCAACTTGGAGAGTATTCTGACAAGAGTATTAACTGGGAGGAATTGATCGAGATGCATGGAGTCGCAGATAATCAGGGATCAGAAGCAACCCAATTTCAAGCATATGACATAAATGAAGAGTTTGCTTTCTCCACTTCAATTTGGAACTTCTAA 1260 0.4587 MLPLLFAVAFSTVPLTLYVPPIRSFNLFVQTVEDYLRQTTVYAVRAYPRIRLAFSRIFNSIVRLARSHTGEAWDKGEESLGYQLCYSSQRDNIYTKHHSCSLQIPRLHLLFSSSRYPKELISHNLALFVHPSPVSTMETCRKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLPHLQPSSSSPIKSQKFKWLPSKNFISMFPSCGLLNVNAQPSVHVIHQRLQQLKQNAGGPSQTLSSSPSDPKDELQIISCKHDAENPLNEKDAKTSSENMLGDLQEKPQIDLHEFLQQLGILKDEKQPERTDSSGSSTEPESLSRAYSDQLGEYSDKSINWEELIEMHGVADNQGSEATQFQAYDINEEFAFSTSIWNF 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2372 419 SMART rav1_2 165 228 IPR001471 GO:0003700|GO:0006355
Glsi02g2372 419 ProSiteProfiles AP2/ERF domain profile. 165 222 IPR001471 GO:0003700|GO:0006355
Glsi02g2372 419 FunFam Ethylene-responsive transcription factor 2 164 223 - -
Glsi02g2372 419 SUPERFAMILY DNA-binding domain 165 223 IPR016177 GO:0003677
Glsi02g2372 419 MobiDBLite consensus disorder prediction 274 293 - -
Glsi02g2372 419 PRINTS Ethylene responsive element binding protein signature 166 177 IPR001471 GO:0003700|GO:0006355
Glsi02g2372 419 PRINTS Ethylene responsive element binding protein signature 188 204 IPR001471 GO:0003700|GO:0006355
Glsi02g2372 419 MobiDBLite consensus disorder prediction 140 163 - -
Glsi02g2372 419 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 135 384 - -
Glsi02g2372 419 CDD AP2 164 224 IPR001471 GO:0003700|GO:0006355
Glsi02g2372 419 Pfam AP2 domain 164 214 IPR001471 GO:0003700|GO:0006355
Glsi02g2372 419 MobiDBLite consensus disorder prediction 342 369 - -
Glsi02g2372 419 MobiDBLite consensus disorder prediction 353 369 - -
Glsi02g2372 419 Gene3D AP2/ERF domain 165 223 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2372 Glsi-ChrGlsi02 73981628 73986105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2372 141 419 AP2-EREBP Transcription Factor Family AT3G57600 52.650 9.14e-89 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi02g2372 AP2 3.4e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2372 02 73981628 73986105 Glsi11g1332 11 8366984 8368446 CCT
Glsi02g2372 02 73981628 73986105 Glsi02g2372 02 73981628 73986105 ECH