Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2367 ATGAATCACTTGATTAATGAGACTGAAGATTCTTCTGCAAGTTTGCTTGAGCTTGCAGCTAATAATGGTATTGAGGGTTTTCAACGATTGATTGAGCGTGATCCATCCTGTGTAGATGAAGTTGGAGTATGGTATGGTCGTCAAAAGGGTTCAAAGCAGATGGTCAAAGAGCAGAGAACGCCGCTGATGGTTGCTGCTACTTATGGGAGCATTGGTGTCATGAAACTGATTCTATCACTATCTGATGCTAACATTAATAATCCTTGTGGCCTTGATAAGAGCACTGCCCTTCACTGTGCAGCATCGGGAGGGGCTGCTAATGCTGTTGATGTTGTGAAACTGCTCTTATCAGCAGGTGCTGATCCAAATTCTGTGGATGCCAATGGTCATCGTCCAGTTGATGTTATTGTTGTTCCTCCCAAGCTTGATCATGTTAAAAACAGTCTTGAAGAACTTCTTCAAACTGATGGTTCCATGGCAGTGTTTAATCTTAGGGTTATCACAACTACATCAAATGCAGATTCTCCACCTTTATCAACTTCACCAGAGAACGACTCTCCTTCTGCACCAGATGTCCAATTGAAGTCAAAGTCAAATGATGCCCCTGCTTCTTCTGTATCAGAGAAGAAAGAATATCCTGTTGACCCATCTCTTCCAGACATCAAGAACAGCATATATTCAACTGATGAGTTCCGAATGTATTCTTTCAAGGTTCGACCTTGTTCCCGTGCTTATTCCCATGATTGGACTGAATGCCCATTTGTCCATCCTGGAGAAAATGCCCGTAGAAGGGACCCAAGAAAGTTTCATTATAGTTGTGTCCCTTGCCCTGATTTTCGGAAGGGGGCTTGTCGACGTGGTGACATGTGTGAATATGCACATGGGGTTTTTGAGTGCTGGCTGCATCCAGCCCAATATCGAACTCGTCTTTGCAAGGATGGGACAAATTGCTCTAGAAGAGTTTGCTTCTTTGCCCATACTGCTGACGAGCTTCGGCCATTATATGTTTCAACCGGTTCTGCTGTTCCCTCTCCTCGCTCAAGTGCATCTTCTGCCATGGATTTTGCTGCAGCCATGAACCTGTTGCCTGGCTCTCCTTCCTTGATGTCTGTCATCTCTCCTTCACCATTCACTCCACCTATGTCTCCATCTGCCAATGGAATTTCACACTCCTCTGTTGCTTGGCCACAACCTAATGTCCCAGCTTTGCATTTGCCTGGAAGTAATCTTCATTCCAGTCATTTGAGATCTTCTTTCAATGCTAGAGATATTCCTGTGGAAGACTTCGATTTGTTGCCAGACTATGATGTTCAGCAACAGCAGCTTCTTAATGAGCTGTCTTGCCTTCCTCAACAACCTATGAATTCTAATACCATAAATCGCTCAGTTCGTATGAAGACCCTTGCCCCTTCAAATCTTGATGATCTCTTTTCTGGTGAGAACTCTTCACCTCGGTTTGCTGATCCAGCATTGGCCTCAGCTGTTTACTCCCCAACACACAAATCAGCTGTCCTTAATCAATTTCAGCAGCAGCAGAGCTTGTTATCACCGGTGAATACAAAATTTCCTTCTAAGAATGTTGAGCATCCCTTATTGCAGTCCTCTTTTGGGGTTCAGACATCAGGAAGGATGTCTCCACGAAATGTGGAACCTATTTCACCAATGAGTTCCAGAATTTCTATGCTAGCTCAACGTGAGAAGCAGCAACAGTTTCGAAGCTTTAGCTCTCGGGAACTTGGCTCTAACTCTGCTTTTGATGCCGTTGCTGGGTCTCCGATCAATTCTTGGTCAAAATGGGGGTCCCCCAACATTAAGTTGGATGGGGCTGTCAGTGCAGATGAATTGGGTAAGCTCCGTAGGTCATCTTCATTTGAGCTTGGGAACAATGGTGAGGAGCCTGATTTGTCATGGGTGCAGTCTCTTGTTAAAGAGTCTCCAACTGAAATTCCAGAGAAGTTGGCAACAAGTGTCCCGGGTGTTGGAGTGGCTGGATCCTCCAGTGAGGGATTAAATATGAGCGCACAAATGGAATCTGTTGATCATGCTGTATTGGGAGCATGGCTTGAACAAATGCAGCTTGATCATCTTGTGGCTCAGCAAAACTGA 2106 0.4487 MNHLINETEDSSASLLELAANNGIEGFQRLIERDPSCVDEVGVWYGRQKGSKQMVKEQRTPLMVAATYGSIGVMKLILSLSDANINNPCGLDKSTALHCAASGGAANAVDVVKLLLSAGADPNSVDANGHRPVDVIVVPPKLDHVKNSLEELLQTDGSMAVFNLRVITTTSNADSPPLSTSPENDSPSAPDVQLKSKSNDAPASSVSEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHTADELRPLYVSTGSAVPSPRSSASSAMDFAAAMNLLPGSPSLMSVISPSPFTPPMSPSANGISHSSVAWPQPNVPALHLPGSNLHSSHLRSSFNARDIPVEDFDLLPDYDVQQQQLLNELSCLPQQPMNSNTINRSVRMKTLAPSNLDDLFSGENSSPRFADPALASAVYSPTHKSAVLNQFQQQQSLLSPVNTKFPSKNVEHPLLQSSFGVQTSGRMSPRNVEPISPMSSRISMLAQREKQQQFRSFSSRELGSNSAFDAVAGSPINSWSKWGSPNIKLDGAVSADELGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIPEKLATSVPGVGVAGSSSEGLNMSAQMESVDHAVLGAWLEQMQLDHLVAQQN 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2367 701 Gene3D - 270 333 - -
Glsi02g2367 701 MobiDBLite consensus disorder prediction 172 205 - -
Glsi02g2367 701 FunFam Zinc finger CCCH domain-containing protein 66 228 296 - -
Glsi02g2367 701 MobiDBLite consensus disorder prediction 172 215 - -
Glsi02g2367 701 ProSiteProfiles Zinc finger C3H1-type profile. 275 297 IPR000571 GO:0046872
Glsi02g2367 701 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Glsi02g2367 701 SMART c3hfinal6 305 328 IPR000571 GO:0046872
Glsi02g2367 701 PANTHER UNKEMPT FAMILY MEMBER 17 645 IPR045234 -
Glsi02g2367 701 SMART ANK_2a 57 87 IPR002110 GO:0005515
Glsi02g2367 701 SMART ANK_2a 92 124 IPR002110 GO:0005515
Glsi02g2367 701 SUPERFAMILY Ankyrin repeat 18 137 IPR036770 -
Glsi02g2367 701 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Glsi02g2367 701 Gene3D - 2 157 IPR036770 -
Glsi02g2367 701 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 275 295 IPR000571 GO:0046872
Glsi02g2367 701 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Glsi02g2367 701 Pfam Ankyrin repeats (3 copies) 16 126 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2367 Glsi-ChrGlsi02 73949124 73951229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2367 7 694 C2H2 Transcription Factor Family AT5G12850 52.908 0.0 675
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi02g2367 Ank_2 8.3e-10 CL0465