Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2364 ATGGGGAATTCGAGAGCGGAGGAGCAGAGTGTATATAGGATCCAAGCTTTGGGCAGCTTGGCATTAGGAAGAAGTGACTCATCATGCCTCAAGCCTCAAAAGTCTTTCAGCAGCGAACTGAGGAATATCAAAGATTTATTTGGAAGCATGCAATTTCAAGAGAAATTGGACTGTGCACACCATTCCAAATCAGATATATGCAGCAATAAACTACACACAACCAGTTCTCAAGCTTGGTGGCATGGCATAGGGCATGATGCCTTCTCTAGGGATATGGCTGGGGAAGGCAAAATGGATTCTACCAGTAAATCACAAGGTAAGGATGTGCTGGCTGACGGGAAGGAGGCTCCCAAAGAGAAAGGCTCTTTCCCCCAGTTTCTTGGTTCTCTTTTCACTAAATGCTATCTTACTATATTGCTTGCACTAGCAGTTGGAGAAAAGGATGAAGAACATCAAAAACAGCTACCGGTTGTCCCTAGTAGGACTTCAACAGTAAATGAATTTCTTGTGCCGCCTACACAGTTGGAGCTTGTTGGCCACTCAATAGTACATCCTCATAGTTTTGGAGTAAATTACGCTAGAATGGTGTTACCACTGGAAATGGAAGAGGAACCTGTCTATGTTAATGCCAAGCAATACCATGGAATTTTGAGGCGCAGGCAGTCACGTGCCAAGGCTGAGCTGGAAAAGAAGTTGATAAAAGTGAGAAAGCCCTACCTTCATGAGTCCCGGCATTTGCATGCTATGAGAAGAGCAAGAGGGTGTGGAGGCCGTTTTCTGAATACAAAGAAACTCGATAATACAGCTGCAAACACTGCCACCAACAAGGATACTGTTAGTTCTGACCACAAAACTGTATCTCCCAACTCATCTGGCTATGCTGGTTCAACTTCGAGTGACAACAAGCAATACTCGCATACTCTGGAATTTAAGTTGTCTGGTTATCAAACCCTCTCAGATGATAGAGGAAATCAAGGAGACTTCTCAGGGAATCAATCTGACAGACTTAACTTTACTGGGGTTCGCAGGGCCCTGACCATAAAATGA 1047 0.4432 MGNSRAEEQSVYRIQALGSLALGRSDSSCLKPQKSFSSELRNIKDLFGSMQFQEKLDCAHHSKSDICSNKLHTTSSQAWWHGIGHDAFSRDMAGEGKMDSTSKSQGKDVLADGKEAPKEKGSFPQFLGSLFTKCYLTILLALAVGEKDEEHQKQLPVVPSRTSTVNEFLVPPTQLELVGHSIVHPHSFGVNYARMVLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKLIKVRKPYLHESRHLHAMRRARGCGGRFLNTKKLDNTAANTATNKDTVSSDHKTVSPNSSGYAGSTSSDNKQYSHTLEFKLSGYQTLSDDRGNQGDFSGNQSDRLNFTGVRRALTIK 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2364 348 MobiDBLite consensus disorder prediction 270 301 - -
Glsi02g2364 348 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 204 259 IPR001289 GO:0003700|GO:0006355
Glsi02g2364 348 SMART cbf3 201 262 IPR001289 GO:0003700|GO:0006355
Glsi02g2364 348 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 96 304 IPR001289 GO:0003700|GO:0006355
Glsi02g2364 348 ProSiteProfiles NF-YA/HAP2 family profile. 202 262 IPR001289 GO:0003700|GO:0006355
Glsi02g2364 348 PRINTS CCAAT-binding transcription factor subunit B signature 205 227 IPR001289 GO:0003700|GO:0006355
Glsi02g2364 348 PRINTS CCAAT-binding transcription factor subunit B signature 236 259 IPR001289 GO:0003700|GO:0006355
Glsi02g2364 348 ProSitePatterns NF-YA/HAP2 subunit signature. 207 227 IPR018362 GO:0003677|GO:0016602
Glsi02g2364 348 Gene3D - 202 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2364 Glsi-ChrGlsi02 73915102 73921980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2364 171 348 CCAAT-HAP2 Transcription Factor Family AT3G20910 43.415 8.42e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Glsi02g2364 CBFB_NFYA 1.2e-26 No_clan