Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2359 ATGAAGTTTCAATCCTCAGCAATACGAGCCTCATTCGCCAAATCCAAACTCTCCCTCTATAGTTATTTGTTTTCTGCAACTAAGAAGGAGAGAGCTATGGAAATGGCAATCAATCTACACAGTACTTCCTTTTCCTCCTCTATGTTAAATCCTATTAGCCTTCGAAGAACCTCTTCTCGTCCCCTATTTGCTAACCAACTATTTGGTCATCCTTTGTCTTCCGCAACACCCACCAAACAGCCGCTGCAATTTGTTTCCAGGAACTCTACTTACAGGACCATCAAATGCTCCGTTTCTGAAGCTGCAGAACCCAAAACTGAGAAGAAGACACAGTTGGTGAGAAGAAGAGACATAAGAAACATAGCAATTGTAGCTCATGTTGATCATGGAAAAACAACTTTAGTTGATGCGATGCTGAAACAAACAAAGGTGTTCCGTGATAATCAATTTGTACAGGAAAGAATAATGGACTCAAATGATTTGGAGCGTGAAAGAGGAATCACAATACTAAGTAAAAATACATCTATCACATATAAAGACACCAAGATTAATATAATAGATACTCCAGGTCATTCTGACTTCGGAGGTGAAGTGGAGCGCATCCTAAACATGGTGGAAGGAATCCTTTTAGTGGTAGACTCTGTTGAAGGCCCAATGCCACAGACAAGATTTGTCTTAAAGAAGGCTCTAGAGTTTGGTCATGCAGTTGTTGTTGTTGTCAATAAAATCGATAGACCTTCTGCTCGTCCAGACTTTGTAATCAATTCCACTTTTGAACTCTTTCTTGAACTAAATGCGTCAGATGAACAGTGTGACTTCCAAGCAATATATGCAAGTGGCATAAAGGGACAGGCAGGACTGTCTCCTGAAAATTTGGCAGAAGACCTAGGGCCGTTGTTTGAAGCCATTGTCAGATGTATCCCTGGACCACATATTGACAAAGATGGTGCACTGCAAATGCTTGCTACAAATATTGAGTATGATGAACATAAAGGACGTATAGCAATTGGGCGCTTGCAAGCTGGAGTTTTACAAAGAGGCATGGATGTCAGGGTATGTACCTCAGAAGATTCGTGCAGATATGGAAGAATTAGTGAGCTATTTGTGTATGACAAATTCAGTAGGGTCCCTGCAGAAAGTGTGGAGGCTGGTGATATATGTGCTGTATGTGGAATTGCTGATATTCAGATTGGGGAAACAATTGCTGATAAAGTATCTGGGAAACCACTGCCTTCCATCAAGGTGGAAGAACCAACAGTGAAAATGTCTTTCTCCATAAACACTTCACCTTTTGTTGGCCGTGAGGGAAAGTATGTTACTAGTAGGAATTTAAGGGATAGGCTGAACCGTGAACTTGAGCGAAATTTGGCTATGAGAGTAGAAGATGGAGAAACAGCAGATACGTTTATTGTCAGTGGCCGTGGTACTTTGCATATTACCATACTCATAGAAAATATGCGAAGAGAAGGATATGAATTCATGGTAGGGCCTCCCAAAGTTATTAACAAGAAAGTGAATGACAAATTGCTGGAACCATATGAGATTGCCACTGTGGAGGTACCAGAAGAACACATGGGGTCTGTTGTTGAACTTCTTGGAAAGAGACGGGGGCAAATGTTCGATATGGAAGGAGTTGGATCCGAAGGAACTACGCTACTCAAATATAAGATCCCAACCCGTGGCCTTCTTGGATTGCGGAATGCAATTTTAACTGCTTCCCGTGGAACAGCAGTTCTCAACACTATATTTGATAGCTATGGGCCTTGGGCTGGAGACATTAATACTCGGGATCAAGGCTCACTGGTTGCTTTTGAGGATGGAACAAGTACTTCTTATGCACTTGCTAGTTCACAGGAGAGAGGACAGATGTTTATTGGTCCTGGAGTGGACGTTTACAAAGGTCAAATTGTTGGCATCCATCAGCGTCCTGGGGATTTGGTCTTAAATGTTTGCAAGAAAAAAGCTGCAACAAACATACGTTCTAACAAGGAACAAACAGTTGTTCTTGATACACCGTTGGATTATAGTCTGGATGACTGCATCGAATACATCCAAGAAGATGAGCTAGTAGAGGTCACTCCCCAGAGTATCCGAATGTCCAAGAATCCAAAACTCGCAAAGAAGACAAGGTAG 2133 0.4187 MKFQSSAIRASFAKSKLSLYSYLFSATKKERAMEMAINLHSTSFSSSMLNPISLRRTSSRPLFANQLFGHPLSSATPTKQPLQFVSRNSTYRTIKCSVSEAAEPKTEKKTQLVRRRDIRNIAIVAHVDHGKTTLVDAMLKQTKVFRDNQFVQERIMDSNDLERERGITILSKNTSITYKDTKINIIDTPGHSDFGGEVERILNMVEGILLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDFVINSTFELFLELNASDEQCDFQAIYASGIKGQAGLSPENLAEDLGPLFEAIVRCIPGPHIDKDGALQMLATNIEYDEHKGRIAIGRLQAGVLQRGMDVRVCTSEDSCRYGRISELFVYDKFSRVPAESVEAGDICAVCGIADIQIGETIADKVSGKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLNRELERNLAMRVEDGETADTFIVSGRGTLHITILIENMRREGYEFMVGPPKVINKKVNDKLLEPYEIATVEVPEEHMGSVVELLGKRRGQMFDMEGVGSEGTTLLKYKIPTRGLLGLRNAILTASRGTAVLNTIFDSYGPWAGDINTRDQGSLVAFEDGTSTSYALASSQERGQMFIGPGVDVYKGQIVGIHQRPGDLVLNVCKKKAATNIRSNKEQTVVLDTPLDYSLDDCIEYIQEDELVEVTPQSIRMSKNPKLAKKTR 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2359 710 SUPERFAMILY EF-G C-terminal domain-like 416 500 IPR035647 -
Glsi02g2359 710 Gene3D bipa protein 596 675 IPR042116 -
Glsi02g2359 710 FunFam GTP-binding protein TypA 502 595 - -
Glsi02g2359 710 Pfam Elongation factor Tu domain 2 332 401 IPR004161 GO:0005525
Glsi02g2359 710 SUPERFAMILY Translation proteins 265 411 IPR009000 -
Glsi02g2359 710 Gene3D - 115 311 IPR027417 -
Glsi02g2359 710 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 319 IPR027417 -
Glsi02g2359 710 FunFam GTP-binding protein TypA 596 682 - -
Glsi02g2359 710 SMART EFG_C_a 508 597 IPR000640 -
Glsi02g2359 710 NCBIfam translational GTPase TypA/BipA 118 706 IPR006298 GO:0003924|GO:0005525
Glsi02g2359 710 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 590 702 - -
Glsi02g2359 710 CDD BipA_TypA_II 318 411 IPR047042 -
Glsi02g2359 710 CDD BipA_III 418 496 IPR047043 -
Glsi02g2359 710 Pfam Elongation factor G C-terminus 509 594 IPR000640 -
Glsi02g2359 710 SUPERFAMILY EF-G C-terminal domain-like 511 626 IPR035647 -
Glsi02g2359 710 CDD BipA_TypA_C 511 590 IPR035651 -
Glsi02g2359 710 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 116 311 IPR000795 GO:0003924|GO:0005525
Glsi02g2359 710 Pfam Elongation factor Tu GTP binding domain 117 308 IPR000795 GO:0003924|GO:0005525
Glsi02g2359 710 Gene3D - 502 595 - -
Glsi02g2359 710 PRINTS GTP-binding elongation factor signature 184 194 IPR000795 GO:0003924|GO:0005525
Glsi02g2359 710 PRINTS GTP-binding elongation factor signature 120 133 IPR000795 GO:0003924|GO:0005525
Glsi02g2359 710 PRINTS GTP-binding elongation factor signature 164 172 IPR000795 GO:0003924|GO:0005525
Glsi02g2359 710 PRINTS GTP-binding elongation factor signature 236 245 IPR000795 GO:0003924|GO:0005525
Glsi02g2359 710 FunFam GTP-binding protein TypA 419 524 - -
Glsi02g2359 710 Gene3D Translation factors 312 412 - -
Glsi02g2359 710 Gene3D Elongation Factor G (Translational Gtpase), domain 3 419 702 - -
Glsi02g2359 710 NCBIfam small GTP-binding protein domain 118 251 IPR005225 GO:0005525
Glsi02g2359 710 CDD TypA_BipA 117 310 IPR047041 -
Glsi02g2359 710 FunFam GTP-binding protein TypA 312 412 - -
Glsi02g2359 710 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 157 172 IPR031157 -
Glsi02g2359 710 FunFam GTP-binding protein TypA 115 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2359 Glsi-ChrGlsi02 73888657 73895767 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2359 116 245 Eukaryotic Initiation Factors Gene Family AT3G22980 43.939 2.42e-24 107