Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2357 ATGGGTAATTGTTGCGTAACTCCGTCGGGCCCTCGTGAGACGAAGAAGGGGAAGAAGAAGAAGGAAAACCCATTTGCGACCGATTACGACTACCGTGGCAACGGTGGAAACAAGCTCTCCGTTTTGAAGGATCCGACGGGTCACGAAATCGAGCTCAGATACGAGTTGGGTCGCGAGCTTGGAAGGGGAGAATTCGGAATTACATACCTTTGCACCGATAGAGAGACGGGTGAAGTTTTTGCTTGCAAATCGATATCGAAGAAGAAGCTGAGAACAGCCGTTGACATAGAGGATGTGAGGAGAGAGGTTGAGATCATGAAGCATATGCCAAAGCACCCAAATATTGTTAGCTTCAAGGACACCTATGAGGACGACAATGCGGTCCATCTTGTGATGGAATTGTGCGAAGGAGGAGAATTATTCGATCGGATCGTTGCGCGTGGCCACTACACAGAGCGTGCTGCCGCTGCCGTCACACGGACGATCGTCGAAGTTGTGCAGATGTGCCACAAACATGGTGTGATGCATCGGGATCTCAAACCTGAGAACTTTTTGTTTGGAAACAAGAAGGAAACAGGACCTCTGAAGGCTATTGATTTTGGATTGTCAGTTTTCTTTAAACCTGGTGAAAGATTTAATGAGATAGTTGGAAGTCCATATTACATGGCTCCTGAGGTACTAAAACGAAATTATGGTCCAGAAGTAGATATTTGGAGTGCTGGAGTAATTCTTTACATCCTACTTTGTGGTGTCCCACCGTTTTGGGCAGAAACTGAACAGGGAGTTGCACAAGCAATTATACGATCTGTTCTTGATTTTAGAAGGGACCCGTGGCCAAAAGTTTCTGATAATGCAAAAGACCTTGTGAAGAAGATGCTTAATCCTGACCCAAAGCGGCGGCTTACTGCACAAGAAGTGTTAGATCATCCATGGATACAGAATGCAAAGAAAGCTCCTAATGTTTCATTAGGAGAAACTGTTAAGGCAAGGCTCAAGCAATTCTCTGTAATGAACAAGCTAAAGAAAAGAGCTCTGAGGGTAATTGCGGAGCATATGTCAGTAGAAGAAGTTGCTGGAATAAAAGAGGGATTCCAGCTGATGGATACAGGAAATAGAGGCAAGATTAACATTGATGAGCTACGAGCAGGATTGCATAAACTAGGCCATCAAATTTCTGATGCCGACATTCAAATTATGATGGAAGCAGGCGATACAGATAAAGATGGATACCTAGATTATGGAGAATTTGTTGCTATTTCTGTTCATCTGAGAAAGATGGGCAATGATGAGCACCTTCGAAAAGCCTTCCAGTTCTTTGATAAGAACCAAAGTGGGTATATAGAGATCGAGGAGCTACGTGAGGCCTTGGCTGATGATGAAGTTGATCCAAACAATGAAGAAGTCATAAATGCAATTATGCACGATGTGGACACAGACAAGGATGGAAAAATAAGTTATGAGGAATTTGCTGCAATGATGAAGGCTGGCACAGATTGGAGAAAAGCATCAAGGCAGTATTCACGGGAGAGGTTTACTAGTCTCAGTCTGAAATTGATGAGGGACGGCTCCTTGCAGTTAAACAATGACAAACAATGA 1596 0.4392 MGNCCVTPSGPRETKKGKKKKENPFATDYDYRGNGGNKLSVLKDPTGHEIELRYELGRELGRGEFGITYLCTDRETGEVFACKSISKKKLRTAVDIEDVRREVEIMKHMPKHPNIVSFKDTYEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVTRTIVEVVQMCHKHGVMHRDLKPENFLFGNKKETGPLKAIDFGLSVFFKPGERFNEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWAETEQGVAQAIIRSVLDFRRDPWPKVSDNAKDLVKKMLNPDPKRRLTAQEVLDHPWIQNAKKAPNVSLGETVKARLKQFSVMNKLKKRALRVIAEHMSVEEVAGIKEGFQLMDTGNRGKINIDELRAGLHKLGHQISDADIQIMMEAGDTDKDGYLDYGEFVAISVHLRKMGNDEHLRKAFQFFDKNQSGYIEIEELREALADDEVDPNNEEVINAIMHDVDTDKDGKISYEEFAAMMKAGTDWRKASRQYSRERFTSLSLKLMRDGSLQLNNDKQ 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2357 531 SUPERFAMILY Protein kinase-like (PK-like) 53 320 IPR011009 -
Glsi02g2357 531 CDD EFh 431 494 IPR002048 GO:0005509
Glsi02g2357 531 ProSiteProfiles EF-hand calcium-binding domain profile. 427 462 IPR002048 GO:0005509
Glsi02g2357 531 Pfam EF-hand domain pair 373 421 IPR002048 GO:0005509
Glsi02g2357 531 Gene3D - 321 496 - -
Glsi02g2357 531 MobiDBLite consensus disorder prediction 1 28 - -
Glsi02g2357 531 Gene3D Phosphorylase Kinase; domain 1 56 139 - -
Glsi02g2357 531 ProSitePatterns Protein kinases ATP-binding region signature. 60 83 IPR017441 GO:0005524
Glsi02g2357 531 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Glsi02g2357 531 ProSitePatterns EF-hand calcium-binding domain. 404 416 IPR018247 -
Glsi02g2357 531 FunFam Calcium-dependent protein kinase 7 321 497 - -
Glsi02g2357 531 Gene3D Transferase(Phosphotransferase) domain 1 140 320 - -
Glsi02g2357 531 SMART efh_1 395 423 IPR002048 GO:0005509
Glsi02g2357 531 SMART efh_1 468 496 IPR002048 GO:0005509
Glsi02g2357 531 SMART efh_1 431 459 IPR002048 GO:0005509
Glsi02g2357 531 SMART efh_1 359 387 IPR002048 GO:0005509
Glsi02g2357 531 FunFam calcium-dependent protein kinase 13 140 320 - -
Glsi02g2357 531 ProSitePatterns EF-hand calcium-binding domain. 440 452 IPR018247 -
Glsi02g2357 531 ProSiteProfiles EF-hand calcium-binding domain profile. 391 426 IPR002048 GO:0005509
Glsi02g2357 531 CDD STKc_CAMK 53 311 - -
Glsi02g2357 531 ProSiteProfiles EF-hand calcium-binding domain profile. 355 390 IPR002048 GO:0005509
Glsi02g2357 531 ProSitePatterns EF-hand calcium-binding domain. 477 489 IPR018247 -
Glsi02g2357 531 FunFam Calcium-dependent protein kinase 1 56 139 - -
Glsi02g2357 531 ProSiteProfiles EF-hand calcium-binding domain profile. 464 499 IPR002048 GO:0005509
Glsi02g2357 531 SMART serkin_6 54 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g2357 531 SUPERFAMILY EF-hand 341 519 IPR011992 -
Glsi02g2357 531 MobiDBLite consensus disorder prediction 12 27 - -
Glsi02g2357 531 Pfam EF-hand domain pair 430 494 IPR002048 GO:0005509
Glsi02g2357 531 ProSiteProfiles Protein kinase domain profile. 54 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g2357 531 Pfam Protein kinase domain 54 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g2357 531 PANTHER SERINE/THREONINE-PROTEIN KINASE 22 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2357 Glsi-ChrGlsi02 73881042 73884457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2357 1 529 EF-hand Containing Proteins AT5G19450 81.051 0.0 897
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Glsi02g2357 Pkinase 1.2e-77 CL0016