Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2349 ATGGGAACTCCCGAATTCCCAGATCTTGGAAAGCATTGTGCTGTTGATGATTGCAAACTGATTGATTTCTTGCCCTTCACCTGCGATCGCTGTAACCAGGTTTATTGTTTGGAGCACAGAAGTTATATTAAACATCAGTGTCAGAACGCTGACAGACTAGATGTCACTGTGGTCATATGTCCCCTTTGTGCCAAAGGAGTTCGCCTAATTCCTGATCAAGATCCAAACATAACTTGGGAGAATCATGTCAACACTGACTGTGACCCGTCAAATTATGAGAGAGCCGTGAAGAAGAAAAAATGTCCTGCCTCTGGATGCAGAGAGATCTTAGTGTTCTCAAACACAATCAAGTGCAGGGACTGCATGGTAGACCATTGTTTGAAGCATCGGTTTGGACCTGATCACAAGTGTCCTGGACCCAAGAAGTTGGAAACAAGTTTTTCATTTTTGAGTCTCTTGAATAAGAGTAGAAAAGAGGAGCCAAAGGAAAATCCGTCTTCAACTACATCATCATCAAAATGGGCATTAAGCTTTCGTAATGCAGCTTCAAATATTCGATCTTCAGCTGAAGCGAGCATGTCAAAATTGGGTACTGAAATTAACCAAGCTTGGCAAACAGCCAGGGATGGGATGGGACAGAGCAGTGGCAGGGGTAATGGAAATGGCGAAGTGGAGCAATGCCCTCGGTGTGGTGCAAAGTTTTCCTCAGTCACTTCTTTGGTGGATCATGTGCAAAAAGTTCATGAAAGAAACAGTAGCCAATCTGGGGCGACGAAGGTGACAATAGATGTCTGTCCTAAGTGCAGTAGAGGGTTTCGAGATCCAGTGTCCCTTGTGGAGCATGTTGAGAGGGATCACGGTGGTAGTTCAAGAGCGTAG 879 0.4482 MGTPEFPDLGKHCAVDDCKLIDFLPFTCDRCNQVYCLEHRSYIKHQCQNADRLDVTVVICPLCAKGVRLIPDQDPNITWENHVNTDCDPSNYERAVKKKKCPASGCREILVFSNTIKCRDCMVDHCLKHRFGPDHKCPGPKKLETSFSFLSLLNKSRKEEPKENPSSTTSSSKWALSFRNAASNIRSSAEASMSKLGTEINQAWQTARDGMGQSSGRGNGNGEVEQCPRCGAKFSSVTSLVDHVQKVHERNSSQSGATKVTIDVCPKCSRGFRDPVSLVEHVERDHGGSSRA 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2349 292 Gene3D - 2 57 IPR035896 -
Glsi02g2349 292 Gene3D - 86 173 IPR035896 -
Glsi02g2349 292 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Glsi02g2349 292 Pfam AN1-like Zinc finger 13 51 IPR000058 GO:0008270
Glsi02g2349 292 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Glsi02g2349 292 SUPERFAMILY beta-beta-alpha zinc fingers 226 282 IPR036236 -
Glsi02g2349 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 225 253 IPR013087 -
Glsi02g2349 292 Pfam C2H2-type zinc finger 226 248 - -
Glsi02g2349 292 FunFam AN1-type zinc finger protein 2B isoform X1 3 64 - -
Glsi02g2349 292 Gene3D Classic Zinc Finger 190 289 - -
Glsi02g2349 292 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 254 - -
Glsi02g2349 292 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Glsi02g2349 292 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Glsi02g2349 292 ProSitePatterns Zinc finger C2H2 type domain signature. 227 248 IPR013087 -
Glsi02g2349 292 SUPERFAMILY AN1-like Zinc finger 58 143 IPR035896 -
Glsi02g2349 292 SMART c2h2final6 263 286 IPR013087 -
Glsi02g2349 292 SMART c2h2final6 225 248 IPR013087 -
Glsi02g2349 292 ProSitePatterns Zinc finger C2H2 type domain signature. 265 286 IPR013087 -
Glsi02g2349 292 SUPERFAMILY AN1-like Zinc finger 6 50 IPR035896 -
Glsi02g2349 292 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Glsi02g2349 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 263 291 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2349 Glsi-ChrGlsi02 73826103 73828894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2349 1 292 C2H2 Transcription Factor Family AT2G41835 63.823 2.23e-127 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi02g2349 zf-AN1 2e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2349 02 73826103 73828894 Glsi11g1347 11 8442481 8443990 CCT
Glsi02g2349 02 73826103 73828894 Glsi02g2349 02 73826103 73828894 ECH